Repbase Reports |
|---|
| 2009, Volume 9, Issue 3 |
| March 31, 2009 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 706 |
Harbinger-1N1_VV |
|||
|---|---|---|---|
Harbinger-1N1_VV, non-autonomous DNA transposon - a consensus sequence. |
|||
|
Submitted: 05-Feb-2009 |
Accepted: 31-Mar-2009 |
||
|
Key Words: Harbinger; DNA transposon; Transposable Element; PIF; TIR; MITE; mPifvine-1.1; Harbinger-1N1_VV |
|||
|
Source: Vitis vinifera |
Organism: Vitis vinifera |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis |
|
| [1] |
Authors: Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M. |
||
|
Title: Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted. |
|||
|
Journal: Repbase Reports 9(3), 706-706 (2009) |
|||
Abstract: Harbinger-1N1_VV (mPifvine-1.1 in [1]) is a non-autonomous DNA transposon which is a deletion derivate of the autonomous Harbinger-1_VV. Individual copies are >90% identical to the consensus sequence. TIRs are 20 bp-long (with 1 conserved mismatch) and flanked by 3 bp-long TSDs. There are approximately 50 highly conserved copies present in the genome which could place this family in the group of MITEs.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||