Repbase Reports |
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| 2009, Volume 9, Issue 3 |
| March 31, 2009 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 705 |
EnSpm-4N1_VV |
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EnSpm-4N1_VV, non-autonomous DNA transposon - a consensus sequence. |
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Submitted: 05-Feb-2009 |
Accepted: 31-Mar-2009 |
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Key Words: EnSpm; DNA transposon; Transposable Element; CACTA; TIR; MITE; mCactavine-4.1; EnSpm-4N1_VV |
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Source: Vitis vinifera |
Organism: Vitis vinifera |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis |
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| [1] |
Authors: Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M. |
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Title: Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted. |
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Journal: Repbase Reports 9(3), 705-705 (2009) |
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Abstract: EnSpm-4N1_VV (mCactavine-4.1 in [1]) is a non-autonomous DNA transposon which is a deletion derivate of the autonomous EnSpm-4VV. Individual copies are >90% identical to the consensus sequence. TIRs are 6 bp-long and flanked by 3 bp-long TSDs. There are approximately 30 highly conserved copies present in the genome which could place this family in the group of MITEs. On the other hand, the size of this element is larger from that of "standard" MITEs. We suggest this family be an intermediate between deletion derivatives of autonomous elements and MITEs.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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