Repbase Reports |
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| 2008, Volume 8, Issue 7 |
| July 31, 2008 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 778 |
hAT-11N_VV |
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hAT-11N_VV, a non-autonomous DNA transposon - a consensus sequence. |
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Submitted: 11-Jul-2008 |
Accepted: 31-Jul-2008 |
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Key Words: hAT; DNA transposon; Transposable Element; TIR; Hatvine-11; hAT-11N_VV |
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Source: Vitis vinifera |
Organism: Vitis vinifera |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis |
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| [1] |
Authors: Benjak,A., Forneck,A. and Casacuberta,J.M. |
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Title: Genome-wide analysis of the cut-and-paste transposons of grapevine. PlosONE: submitted. |
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Journal: Repbase Reports 8(7), 778-778 (2008) |
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Abstract: hAT-11N_VV (Hatvine-11 in [1]) consensus is a non-autonomous element. Its individual copies are >80% identical to the consensus sequence. Although the putative protein product contains a hAT family dimeristation conserved domain, it appears to be only partial compared to other hAT-related proteins found in Vitis. Additionally, individual copies do not contain an intact ORF due to premature stop codons and/or frameshifts. hAT-11N_VV contains 20 bp-long TIRs which are flanked by 8 bp-long TSDs.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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