Repbase Reports |
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| 2008, Volume 8, Issue 7 |
| July 31, 2008 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 764 |
MuDR-4_VV |
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MuDR-4_VV, an autonomous DNA transposon - a consensus sequence. |
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Submitted: 11-Jul-2008 |
Accepted: 31-Jul-2008 |
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Key Words: MuDR; DNA transposon; Transposable Element; mutator; TIR; Mutavine-4; MuDR-4_VV |
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Source: Vitis vinifera |
Organism: Vitis vinifera |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis |
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| [1] |
Authors: Benjak,A., Forneck,A. and Casacuberta,J.M. |
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Title: Genome-wide analysis of the cut-and-paste transposons of grapevine. PlosONE: submitted. |
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Journal: Repbase Reports 8(7), 764-764 (2008) |
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Abstract: MuDR-4_VV (Mutavine-4 in [1]) consensus is a virtual autonomous element. Its individual copies are >90% identical to the consensus sequence but do not contain an intact ORF due to stop codons and/or frameshifts. MuDR-4_VV contains 140-144 bp-long TIRs which are 96% identical to each other, flanked by 9 bp-long TSDs. MuDR-4_VV has an intronless transposase gene. Downstream of the transposase is a putative gene in a reverse orientation virtually encoding for a ULP1-like protein similar to CAN65286.1 (region 5952-4866).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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