Repbase Reports
2008, Volume 8, Issue 4
April 30, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 395

DNA-3-5_NV

Starlet sea anemone DNA-3-5_NV non-autonomous DNA transposon - consensus.

Submitted:
30-Apr-2008 		Accepted:
30-Apr-2008
Key Words:
DNA transposon; Transposable Element; DNA-3-5_NV
Source:
Nematostella 		Organism:
Nematostella 		Taxonomy:
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae
[2] Authors:
Kapitonov,V. and Jurka,J.
Title:
DNA-3-5_NV - a family of non-autonomous DNA transposons from the starlet sea anemone genome.
Journal:
Repbase Reports 8(4), 395-395 (2008)
Abstract:
DNA-3-5_NV elements are flanked by 3-bp targets site duplications. The consensus sequence contains long TIRs. Termini of DNA-3-5_NV differs from elements that belong to the Harbinger and En/Spm superfamilies, which are also flanked by 3-bp TSDs. It is likely that DNA-3-5_NV belongs to a novel superfamily of DNA transposons, which also includes DNA-3-3_NV, DNA-3-4_NV, DNA-3-6_NV and DNA3-7_NV. In addition to 3-bp TSDs, all these elements have the 5'-TAG and CTA-3' termini.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Putnam,N.H., Srivastava,M., Hellsten,U., Dirks,B., Chapman,J., Salamov,A., Terry,A., Shapiro,H., Lindquist,E., Kapitonov,V.V., Jurka,J., Genikhovich,G., Grigoriev,I.V., Lucas,S.M., Steele,R.E., Finnerty,J.R., Technau,U., Martindale,M.Q. and Rokhsar,D.S.
    Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
    Science 317(5834), 86-94 (2007)

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