Repbase Reports |
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| 2008, Volume 8, Issue 2 |
| February 29, 2008 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 61 |
Chapaev3-3N1_AC |
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Chapaev3-3N1_AC is a non-autonomous DNA transposon - consensus. |
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Submitted: 29-Feb-2008 |
Accepted: 03-MAR-2008 |
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Key Words: Chapaev; DNA transposon; Transposable Element; Nonautonomous; Chapaev3; Chapaev3-1_ET, Chapaev3-3_AC, Chapaev3-3N1_AC; Chapaev3-3N1_AC |
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Source: Oryzias latipes |
Organism: Oryzias latipes |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Chapaev3, a distinctive group of animal Chapaev transposons. |
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Journal: Repbase Reports 8(2), 61-61 (2008) |
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Abstract: Chapaev3-3N1_AC belongs to the Chapaev3 group of the Chapaev superfamily of DNA transposons (see comments on Chapaev3-1_PM). Chapaev3-3N1_AC is a relatively old family of lizard non-autonomous Chapaev3 transposons: Chapae3-3N1_AC elements are 80-90% identical to their consensus sequence, which was derived from multiple alignment of 50 Chapaev3-3N1_AC elements. The genome contains a few thousand copies of Chapaev3-3N1_AC elements (including different subfamilies). Chapaev3-3N1_AC contains imperfect 11-bp TIRs (2 mismatches) and ~100-bp subterminal inverted repeats. The Chapaev3-3N1_AC is 97% identical to the hedgehog tenrec Chapaev3-1_ET consensus (a perfect case of horizontal transfer of Chapaev transposons between mammals and reptiles). The lizard genome contains only two long copies of a Chapaev3-3_AC autonomous transposon (e.g. contig_8712, pos. 139343-142746; contig_9047, pos. 170536-169001), which are ~87% identical to the Chapaev3-1_ET consensus sequence.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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