Repbase Reports |
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| 2008, Volume 8, Issue 12 |
| December 31, 2008 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2162 |
Gypsy-165-I_DR |
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An internal portion of the Gypsy-165_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 17-Nov-2008 |
Accepted: 31-Dec-2008 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; endogenous retrovirus; Interspersed repeat; reverse transcriptase; gag; Gypsy superfamily; integrase; Gypsy-165-I_DR; Gypsy-165-LTR_DR; Gypsy-165_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Dib,M.R. and Naveira,H.F. |
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Title: Gypsy-165_DR, a family of LTR retrotransposons from zebrafish. |
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Journal: Repbase Reports 8(12), 2162-2162 (2008) |
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Abstract: Gypsy-165-I_DR is an internal portion of the Gypsy-165_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-165-LTR_DR. Gypsy-165_DR is characterized by 4-bp target site duplications. The internal portion encodes two proteins: the 344-aa gag Gypsy30_DR1p (pos. 18-1049) and 1131-aa polyprotein (pos. 959-4351, conceptual translation) composed of the protease, reverse transcriptase, and integrase domains.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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