Repbase Reports |
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| 2007, Volume 7, Issue 9 |
| September 30, 2007 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 814 |
Gypsy42-I_DR |
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An internal portion of the Gypsy42_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 21-Sep-2007 |
Accepted: 30-Sep-2007 |
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Key Words: LTR Retrotransposon; Transposable Element; Interspersed repeat; Gypsy; Gypsy superfamily; Gypsy42_DR; Gypsy42-LTR_DR; Gypsy42-I_DR; endogenous retrovirus; gag; integrase; reverse transcriptase |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Dib,M.R. and Naveira,H.F. |
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Title: Gypsy42_DR, a family of LTR retrotransposons from zebrafish. |
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Journal: Repbase Reports 7(9), 814-814 (2007) |
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Abstract: Gypsy42-I_DR is an internal portion of the Gypsy42_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy42-LTR_DR. Gypsy42_DR is characterized by 4-bp target site duplications. The internal portion encodes one polyprotein the 1295-aa polyprotein Gypsy42_DR1p (pos. 170-4054) composed of the gag, protease, reverse transcriptase, and integrase domains. Some insertions fairly recent, according to the hight identity between their flanking LTRs. Consensus obtained after the alignment of at least three independent insertions bearing at least 85% Homology over at least 1000bp.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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