Repbase Reports
2007, Volume 7, Issue 7
July 31, 2007
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 384

Copia-3-I_NV

Internal portion of the Starlet sea anemone Copia-3_NV autonomous LTR Retrotransposon - consensus.

Submitted:
06-Jul-2007 		Accepted:
31-Jul-2007
Key Words:
Copia; LTR Retrotransposon; Transposable Element; 4-bp TSDs; Copia-3-I_NV; Copia-3-LTR_NV; Copia-3_NV
Source:
Nematostella vectensis 		Organism:
Nematostella vectensis 		Taxonomy:
Eukaryota; Metazoa; Cnidaria; Anthozoa; Zoantharia; Actiniaria; Edwardsiidae; Nematostella
[2] Authors:
Kapitonov,V. and Jurka,J.
Title:
Copia-3_NV - a family of autonomous LTR Retrotransposons from the starlet sea anemone genome.
Journal:
Repbase Reports 7(7), 384-384 (2007)
Abstract:
Copia-3_NV is a family of recently transposed retrotransposons. Copia-3-I_NV is the internal portion of Copia-3_NV flanked by the Copia-3-LTR_NV long terminal repeats. The consensus sequence is not complete and the polyproteins-encoding ORF is corrupted by mutations causing stop-codons and frame shifts.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Putnam,N.H., Srivastava,M., Hellsten,U., Dirks,B., Chapman,J., Salamov,A., Terry,A., Shapiro,H., Lindquist,E., Kapitonov,V.V., Jurka,J., Genikhovich,G., Grigoriev,I.V., Lucas,S.M., Steele,R.E., Finnerty,J.R., Technau,U., Martindale,M.Q. and Rokhsar,D.S.
    Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
    Science 317(5834), 86-94 (2007)

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