Repbase Reports |
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| 2007, Volume 7, Issue 2 |
| February 28, 2007 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 116 |
Kolobok-1_BF |
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A family of autonomous Kolobok transposons - a consensus. |
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Submitted: 27-Feb-2007 |
Accepted: 28-Feb-2007 |
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Key Words: Kolobok; DNA transposon; Interspersed Repeat; Kolobok-1_BF |
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Source: Branchiostoma floridae |
Organism: Branchiostoma floridae |
Taxonomy: Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Kolobok, a novel superfamily of eukaryotic DNA transposons. |
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Journal: Repbase Reports 7(2), 116-116 (2007) |
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Abstract: Kolobok-1_BF is a consensus sequence of a family of autonomous Kolobok transposons that were active in the lancelet genome in a last few million years. The Kolobok-1_BF transposon is characterized by 212-bp terminal inverted repeats, TTAA target site duplications, and it encodes two proteins: (i) the 835-aa transposase, Kolobok-1_BF1p, composed of the THAP DNA-binding domain and catalytic "DDE" domain, which is conserved in all Kolobok transposases, and (ii) the 281-aa Kolobok-1_BF2p protein. The second protein is conserved in highly diverse Kolobok transposons present in the genomes of vertebrates (frog, fish), chordates (lancelet, sea urchin, sea squirt), and cnidarians (starlet sea anemone). See also comments in Kolobok-1_XT.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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