Repbase Reports |
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| 2006, Volume 6, Issue 5 |
| May 31, 2006 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 241 |
Gypsy-9-I_CR |
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Gypsy-9-I_CR is an internal portion of Gypsy-9_CR LTR retrotransposon - a fossilized copy. |
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Submitted: 31-May-2006 |
Accepted: 31-May-2006 |
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Key Words: Gypsy; LTR Retrotransposon; Interspersed Repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-9-I_CR; Gypsy-9-LTR_CR |
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Source: Chlamydomonas reinhardtii |
Organism: Chlamydomonas reinhardtii |
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy-9_CR, a family of gypsy LTR retrotransposons from the green algae genome. |
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Journal: Repbase Reports 6(5), 241-241 (2006) |
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Abstract: This is an internal portion of Gypsy-9_CR LTR retrotransposon. It encodes one 2689-aa polyprotein composed of gag, reverse transcriptase, PHD zinc finger, and integrase. This polyprotein is characterized by unusually long distance between the reverse transcriptase and integrase (~800 aa). The internal portion contains also a second ORF2 (pos. 9768-11813), which may be artificial because of the high GC content.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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