Repbase Reports |
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| 2006, Volume 6, Issue 4 |
| April 30, 2006 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 194 |
Rehavkus-2_CS |
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This is a recently transposed Rehavkus-2_CS DNA transposon - a consensus sequence. |
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Submitted: 30-Apr-2006 |
Accepted: 30-Apr-2006 |
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Key Words: Rehavkus; DNA transposon; Interspersed Repeat; Rehavkus-2_CS |
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Source: Ciona savignyi |
Organism: Ciona savignyi |
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona |
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| [1] |
Authors: Kapitonov,V.V., Gentles,A.J. and Jurka,J. |
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Title: Rehavkus-2_CS, a family of Rehavkus DNA transposons from the sea squirt Ciona savignyi genome. |
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Journal: Repbase Reports 6(4), 194-194 (2006) |
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Abstract: Rehavkus-2_CS belongs to the Rehavkus superfamily of "cut and paste" DNA transposons, which are widespread in different metazoa, including insects, sea squirts, sea urchin and fish. The genome harbors several copies of this tranpsoson. Its ~2-kb inverted termini are composed of a 343-bp terminal inverted repeat and 185-bp subterminal minisatellite-like unit. The transposon is flanked by a 9-bp target site duplication and encodes a 1071-aa Rehavkus-2_CS tranposase. The C-terminus of the transposase is composed of the Ulp1 cysteine protease domain (pos. 830-990) and PHD zinc finger (pos. 1023-1070).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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