Repbase Reports
2006, Volume 6, Issue 4
April 30, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 175

HAT20_CB

Caenorhabditis briggsae family of DNA transposons - a consensus.

Submitted:
30-Apr-2006 		Accepted:
30-Apr-2006
Key Words:
DNA transposon; Interspersed Repeat; Non-autonomous; Cb000052; DNA; HAT20_CB
Source:
Caenorhabditis briggsae 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[2] Authors:
Pavlicek,A. and Jurka,J.
Title:
HAT20_CB - a family of nonautonomous DNA transposons.
Journal:
Repbase Reports 6(4), 175-175 (2006)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. Copies are 95% identical to the consensus. HAT20_CB contains ~260nt long TIRs and is flanked by 8bp-long target duplications. TIRs related to HAT18_CB.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,L.D., Bao,Z., Blasiar,D., Blumenthal,T., Brent,M.R., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A., Coulson,A., D'Eustachio,P., Fitch,D.H., Fulton,L.A., Fulton,R.E., Griffiths-Jones,S., Harris,T.W., Hillier,L.W., Kamath,R., Kuwabara,P.E., Mardis,E.R., Marra,M.A., Miner,T.L., Minx,P., Mullikin,J.C., Plumb,R.W., Rogers,J., Schein,J.E., Sohrmann,M., Spieth,J., Stajich,J.E., Wei,C., Willey,D., Wilson,R.K., Durbin,R. and Waterston,R.H.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol 1(2), 166-192 (2003)

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