Repbase Reports
2006, Volume 6, Issue 2
February 28, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 64

Gypsy-3-I_AF

Internal portion of the Gypsy-3_AF LTR retrotransposon - a consensus sequence.

Submitted:
28-Feb-2006 		Accepted:
28-Feb-2006
Key Words:
Gypsy; LTR Retrotransposon; Interspersed Repeat; Gypsy superfamily; Gypsy-3_AF; Gypsy-3-LTR_AF; Gypsy-3-I_AF
Source:
Aspergillus fumigatus 		Organism:
Aspergillus fumigatus 		Taxonomy:
Eukaryota; Fungi; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus
[2] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Gypsy-3_AF, a family of gypsy LTR retrotransposons in the Aspergillus fumigatus genome.
Journal:
Repbase Reports 6(2), 64-64 (2006)
Abstract:
This is an internal portion of the Gypsy-3_AF LTR retrotransposon. Two proviral copies are 94% identical to each other. All 374 mismatches are transitions. Therefore, most of the mutations was induced by RIP. Its PBS (pos. 2-13) is complementary to Gypsy-3-LTR_AF (pos. 207-218 (self-primed reverse transcription).
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Galagan,J.E., Calvo,S.E., Cuomo,C., Ma,L.J., Wortman,J.R., Batzoglou,S., Lee,S.I., Spevak,C.C., Basturkmen,M., Clutterbuck,J., Kapitonov,V., Jurka,J., Scazzocchio,C., Farman,M., Butler,J., Purcell,S., Harris,S., Braus,G.H., Draht,O., Busch,S., D'Enfert,C., Bouchier,C., Goldman,G.H., Bell-Pedersen,D., Griffiths-Jones,S., Doonan,J.H., Yu,J., Vienken,K., Pain,A., Freitag,M., Selker,E.U., Archer,D.B., Penalva,M.A., Oakley,B.R., Momany,M., Tanaka,T., Kumagai,T., Asai,K., Machida,M., Nierman,W.C., Denning,D.W., Caddick,M., Hynes,M., Paoletti,M., Fischer,R., Miller,B., Dyer,P., Sachs,M.S., Osmani,S.A. and Birren,B.W.
    Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
    Nature 438(7071), 1105-1115 (2005)

© 2001-2024 - Genetic Information Research Institute