Repbase Reports |
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| 2005, Volume 5, Issue 9 |
| September 30, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 235 |
ATLANTYS_LC_I |
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ATLANTYS-like LTR retrotransposon from Lotus corniculatus, internal consensus. |
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Submitted: 30-Sep-2005 |
Accepted: 30-Sep-2005 |
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Key Words: Gypsy; LTR Retrotransposon; Interspersed Repeat; Atlantys; gag-pol; reverse transcriptase; RNase H |
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Source: Lotus corniculatus var. japonicus |
Organism: Lotus corniculatus var. japonicus |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus; Lotus corniculatus |
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| [1] |
Authors: Gentles,A. and Jurka,J. |
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Title: An ATLANTYS-like LTR retrotransposon of the legume Lotus japonicus. |
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Journal: Repbase Reports 5(9), 235-235 (2005) |
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Abstract: This retroelement is similar to various Gypsy, but shares the characteristic, with other ATLANTYS sequences, of putative coding ORFs of unknown function on the complementary strand. The coding strand contains two overlapping ORFs for gag-pol/RNaseH, and reverse transcriptase. The ORFs on the complementary strand are separated by ~600 bp, and occur in the position opposite the normal env gene. They putatively encode sequences of 447 aa and 763 aa. The 763 aa ORF is similar to predicted aminotransferase-like proteins in rice (Oryza sativa). The shorter ORF shows no similarity to known proteins. There are 6 full-length copies in currently available sequence, which are >96% similar to the consensus.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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