Repbase Reports |
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| 2005, Volume 5, Issue 6 |
| June 30, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 145 |
HERV1_I |
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Human endogenous retrovirus HERV1 - a consensus. |
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Submitted: 30-Jun-2005 |
Accepted: 30-Jun-2005 |
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Key Words: Endogenous Retrovirus; Interspersed Repeat; LTR; Internal sequence of human endogenous retrovirus; HERV1 |
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Source: Homo sapiens |
Organism: Homo sapiens |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo |
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| [1] |
Authors: Polavarapu,N., Bowen,N.J. and Mcdonald,J.F. |
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Title: Consensus sequence of human endogenous retrovirus HERV1. |
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Journal: Repbase Reports 5(6), 145-145 (2005) |
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Abstract: LTRs of the element are deposited as HERV1_LTR in repbase.Target site duplications are 4bp.There is ~6% divergence between HERV1 elements and their consensus sequence.The HERV1 consensus sequence encodes gag, protease, reverse transcriptase, RNase H, integrase and envelope proteins. Pol proteins are 50-55% identical to Human endogenous retrovirus HCML-ARV. HERV1 intraelement LTR identity is 93% to 96%. Gag region: nt 914..2521, Polymerase region: 2687..6341, Envelope region : 6657..8552.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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