Repbase Reports |
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| 2005, Volume 5, Issue 3 |
| March 31, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 47 |
COPIA2-I_OS |
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O. sativa Copia LTR retrotransposon - internal consensus. |
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Submitted: 31-Mar-2005 |
Accepted: 31-Mar-2005 |
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Key Words: Copia; LTR Retrotransposon; Interspersed Repeat; reverse transcriptase; COPIA2-I_OS |
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Source: Oryza sativa (japonica cultivar-group) |
Organism: Oryza sativa (japonica cultivar-group) |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza; Oryza sativa |
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Authors: Gentles,A. and Jurka,J. |
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Title: Rice Gypsy LTR retrotransposon. |
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Journal: Repbase Reports 5:(3) p.47 (2005) |
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Abstract: 962 bp LTR is COPIA2-LTR_OS. This copia-type retrotransposon appears to have been active recently in the rice genome, as there are numerous intact copies which are 99% or more similar to the consensus. The internal sequence contains a long uninterrupted ORF that has an integrase domain. The element is flanked in the genome by 5 bp TSDs.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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