Repbase Reports |
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| 2005, Volume 5, Issue 2 |
| February 28, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 46 |
hAT-2_AG |
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hAT-2_AG is a hAT-like autonomous DNA transposon - a consensus sequence. |
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Submitted: 00-Feb-2005 |
Accepted: 28-Feb-2005 |
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Key Words: Autonomous DNA transposon; hAT superfamily; 8-bp TSD; transposase; hAT-2N_AG; hAT-2_AG |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: hAT-2_AG: a family of autonomous hAT DNA transposons from African malaria mosquito. |
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Journal: Repbase Reports 5:(2) p.46 (2005) |
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Abstract: hAT-2_AG is a young family of autonomous DNA transposons that belongs to the hAT superfamily. hAT-2_AG elements are less than 1% divergent from the consensus sequence. The genome harbors 3 copies of hAT-2_AG; only one copy is intact-like. hAT-2_AG has imperfect 17-bp terminal inverted repeats (3 mismatches). hAT-2_AG encodes the 603-aa hAT-2_AGp transposase (pos. 2688-595). The N-terminus of hAT-2_AGp contains the BED zinc finger. hAT-2_AGp: MASNVATSSSIWDHFTRNGTKAKCRYCYNEIAFTKGSTSNLKRHMKAKHPSISLERQHLASTTS PSTQNSEPGPSCSSRPPNLISNFFKQPMNSETKRKLDMMLLKLICKDCLPLSIVESEAFKTFVG CLNQNYDLPTRKNVSNALLPSIYNEILVKVQGEVRNATSIALTTDGWTNVNNTSFLGLTAHFID NDYKLRSCLLECSEISLSHSGQNIAAWIKEVIIKYEIQDKIVGIVTDNAANMKSAARELEFNHV TCFAHSLHLIVKDAIKKSIISTVDEVKRIVMYFKKSPKATNELADTQSKFNLPNLKLKQDVPTR WNSTYDMLNRFYKNKIAIVACADKLNTLDPIKIDWAILEHSLNALKIFDVATNMVSAEKNITVS HVGLLSKMIIRKLNETDYTIPELGNLVTHLKEGVKKRLEIYSNNQIIAKSMLLDPRIKKQGFHE EPLKYRETYELIIQELIPFQTPSMNAQEPHNIDNEANLLLGEFITWVNNAECEIESPIELAKNE LNSFLKIRNIDIKNDPLEWWRIHSSKYPSIYALAKTIICIPGTSVPCERLFSKAGQIYSDKRSR LHPKKFKEIIFIQQNVDKF
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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