Repbase Reports |
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| 2005, Volume 5, Issue 11 |
| November 30, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 393 |
Helitron-1_SP |
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Autonomous Helitron transposon - a consensus sequence. |
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Submitted: 30-Nov-2005 |
Accepted: 30-Nov-2005 |
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Key Words: Helitron; DNA transposon; Interspersed Repeat; Helitron-N1_SP |
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Source: Strongylocentrotus purpuratus |
Organism: Strongylocentrotus purpuratus |
Taxonomy: Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Helitron-1_SP, a family of autonomous Helitrons in the sea urchin genome. |
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Journal: Repbase Reports 5(11), 393-393 (2005) |
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Abstract: The genome contains several copies (>95% identical to each other) of Helitron-1_SP. Terminal parts of this transposon are not determined yet. The recovered portion of the transposon encodes a 3108-aa HEL-1_SP protein (pos. 707-10018) composed of the PHS zinc-finger (aa pos. 29-77); OTU cysteine protease (836-957); replicase (1912-1925, 2102-2109); helicase (2400-2840); CR1-like AP endonuclease (2885-3097). This set of domains is typical for HELs encoded by Helitrons in vertebrates, chordates, echinoderms and even in cnidarians (no PHD, Kapitonov VV, pers. comm.).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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