Repbase Reports
2005, Volume 5, Issue 10
October 31, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 298

COPI2_I

Copia-type LTR-retrotransposon from O. sativa (internal portion).

Submitted:
10-Oct-2005 		Accepted:
31-Oct-2005
Key Words:
Copia; LTR Retrotransposon; Interspersed Repeat; COPI2_LTR
Source:
Oryza sativa (japonica cultivar-group) 		Organism:
Oryza sativa (japonica cultivar-group) 		Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza; Oryza sativa
[2] Authors:
Jurka,J.
Title:
Copi2: Identification of a new Copia-type LTR retrotransposon from rice.
Journal:
Repbase Reports 5(10), 298-298 (2005)
Abstract:
Similarity of the protein-coding portion to Copia-type LTR retrotransposon was noted in ref. 1 but the proposed ORF goes beyond the 3' LTR region. Classification and exact coordinates are reported in this entry. LTRs are >99% identical (one substitution and one indel).
Derived:
Positions 146856 151002 Accession No AC116368 EMBL/GenBank/DDBJ
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Buell,C., Yuan,Q., Ouyang,S., Liu,J., Wang,A., Maiti,R., Lin,H., Zhu,W., Hamilton,J., Jones,K., Tallon,L., Feldblyum,T., Tsitrin,T., Bera,J., Kim,M., Jin,S., Fadrosh,D., Vuong,H., Overton II,L., Reardon,M., Weaver,B., Johri,S., Lewis,M., Utterback,T., Van Aken,S., Wortman,J., Haas,B., Koo,H., Zismann,V., Hsiao,J., Iobst,S., de Vazeilles,A., White,O., Salzberg,S. and Fraser,C.
    None.
    Unpublished (2005)

© 2001-2024 - Genetic Information Research Institute