Repbase Reports |
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| 2005, Volume 5, Issue 1 |
| January 31, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 27 |
Gypsy-27-I_DR |
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An internal portion of the Gypsy-27_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 00-Jan-2005 |
Accepted: 31-Jan-2005 |
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Key Words: LTR retrotransposon; endogenous retrovirus; Gypsy superfamily; gag; reverse transcriptase; integrase; Gypsy-27_DR; Gypsy-27-LTR_DR; Gypsy-27-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy-27_DR, a family of LTR retrotransposons from zebrafish |
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Journal: Repbase Reports 5:(1) p.27 (2005) |
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Abstract: Gypsy-27-I_DR is an internal portion of the Gypsy-27_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-27-LTR_DR. Gypsy-27_DR is characterized by 4-bp target site duplications. The internal portion encodes one polyprotein: the 1632-aa Gypsy-27_DR1p (pos. 71-4966) composed of the gag, protease, reverse transcriptase, and integrase domains. The consensus sequence was built from 5 copies less than 1% diverged from the consensus sequence. Gypsy-27_DR1p: MEAENFLINFPDAAEGSCEGPSHNSPVTPQIDRSLLDEDTGMEQPFIGAPILSSESRTDDLAVL VQAIDSLKSVFVDTVDRQKKWLQDSTELCTHEVPKKTLTVVEKAHSEFLDVLSDRMKEFTKHTI EAIQWNSKQTHNEFKAMFDEANSSMFSSFKRALEESRVGEKTLQEEVCSLRKELLAMQTSLDSF MQQRISLDTKVDEKVLVSGSQVCSNTSSHVDSSESISQPALSNLTCGRIPPIKMVFPTFGGVND ESDPVIYLERCNDFLALRPMSNSEILATMRSVLHASARDWWETVRFKINSWESFQKAFLAVFLP EDYQDVLEEKVRNRLQGTNESVRDFAFSFQALFKRWKKEATDTEVLKALLKAMNPCYASQLRGR AQTVEELVRLGTQLERDYDHQIKYNQLQLPKSSFLDQHLSKKSKGVEVKSNLPPEQSLTSLLCW RCHENHSPGSCSKFKAVLSGKQTGGQFQGTKEFQPQNQQRGMLSAYDTQRFVKKDVSSGRKLDK RDGIKILRQLVIPMMVRNCSGKALVDTGATYTLLNVDLWNKIKEPNERLDVWHEGPLYLANGDA TVPLGQKVLDFYLQDLHFQVPTVVLPAQNLVYSMVLGLDFIALTGLQLNIKDQLYSFSDDPQGR VFPFQPPITPGDSWKCCKPPGNYNPSASLYSAIPPVQFVCTANECVDKSDVGESGSVLMELLQS KIKESNLSERESHVLFTLLYDHPEVCTPNLGRTHLVQHKIAVSTDVVVAQKPYRLPIHKKEIVK EQIDDMLNQDIIQPSHSPWASPIVLVPKKDGGQRFCVDYRKLNAVSESDAFPLPTVNEILESLS GSGIFSTLDLNSGYWQVSMHPDSMAKTAFVSPFGLYEFKVLPFGLKNAPATFQRLMNRVLADYL GQCCLVYLDDIVVYSANFHQHVLDLQKVLRCLQRAGLTLKLPKCHFCLTEIKFLGHIVTTDGVK ADPAKTEAIQNFPVPTNLKELQRFLGMSGWYHRYVQNFSDIAEPLNALKKKGVRFQWTAECQVA FDCLKRHLSSPPVLGHPNHAHTFVVYTDASSTGLGAVLAQRPSTFGASEEVLAYASRTLTSAEK NYSTTERECLAVVWAVERWRHYLEGKSFIVVTDHASLLWVFNTTKTNSRLIRWALRLQEFEFIL EYRKGKLNSAPDALSRIDVPDSCPMVASYVPKQSTESMVSLFPLCDEDIWIAQQQDVEIQRIYQ SLAEGKQSDEGSGSEFVILEDKVYRKVSNPTKGTHFQIYVPQTLREILLEAYHSNPLSGHFGRY KTQKRLMQVAFWPNMWRDVSDFVKNCTSCQQNKPECRKPAGKLQQTEVKEPWEMLGVDLMGPLP RSTLGNTQLLVVVDYYSHWVEMFPLRKATAGVIAQTLRKEVLTRWGVPKFLLSDRGPQFTSEIL KDLCSRWGVVQKLTTAYHPQTNFTERVNQVIKVMISSYVFGEHNRWDHYLPELRYAINSAVQES TGYSPAELLLHRNLRGPFELVLEPHQTGLRVLKDLQEVVKRNVRRAKEKQKRLYDARRRDVHFT RNDRVWMRAHPLSKASQAFAAKFAARWIGPYRIVEKLGPVNYRIVREDNGEDLRTVHVCNLKPA FPSAGELDRRERERVLKIFVEESEDEEFLGFE
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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