Repbase Reports |
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| 2005, Volume 5, Issue 1 |
| January 31, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 19 |
Gypsy-23-I_DR |
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An internal portion of the Gypsy-23_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 00-Jan-2005 |
Accepted: 31-Jan-2005 |
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Key Words: LTR retrotransposon; endogenous retrovirus; Gypsy superfamily; gag; reverse transcriptase; integrase; Gypsy-23_DR; Gypsy-23-LTR_DR; Gypsy-23-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy-23_DR, a family of LTR retrotransposons from zebrafish |
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Journal: Repbase Reports 5:(1) p.19 (2005) |
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Abstract: Gypsy-23-I_DR is an internal portion of the Gypsy-23_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-23-LTR_DR. Gypsy-23_DR is characterized by 4-bp target site duplications. The internal portion encodes one polyprotein composed of the gag, protease, reverse transcriptase, and integrase domains. Likely, based on structure of related elements, including Gypsy7_DR and Gypsy-22_DR, the polyprotein was encoded in active elements by one ORF. It contains a few stop-codons in the consensus sequence that was built from four copies less than 4% divergent from each other.
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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