Repbase Reports |
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| 2005, Volume 5, Issue 1 |
| January 31, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 13 |
Gypsy-20-I_DR |
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An internal portion of the Gypsy-20_DR LTR retrotransposon - a fossilized sequence. |
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Submitted: 00-Jan-2005 |
Accepted: 31-Jan-2005 |
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Key Words: LTR retrotransposon; endogenous retrovirus; Gypsy superfamily; gag; protease; reverse transcriptase; integrase; Gypsy-20_DR; Gypsy-20-LTR_DR; Gypsy-20-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy-20_DR, a family of LTR retrotransposons from zebrafish |
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Journal: Repbase Reports 5:(1) p.13 (2005) |
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Abstract: Gypsy-20-I_DR is an internal portion of the Gypsy-20_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-20-LTR_DR. The genome contains one one copy of Gypsy-20-I_DR that is flanked by 3% diverged LTRs. The internal portion contains two ORFs encoding gypsy-like gag and pol proteins. The second ORF contains several stop codons. The first ORF encodes the 551-aa Gypsy-20_DR1p gag (pos. 170-1822). Gypsy-20_DR1p: MDFCNRFDVDGQNSLYVTGVEGSCSMEVISGFFEVNGEIEKVVRVPDEPGQTVGRVFIQYSSES SILKIEPDSLGDLPSPNDTAVTWHVRTVRDISQEKLGEELAQRYLDELNTIPGSGRAAFLLALQ KELQSVQLHSGYLQSPEAGPHTTVHSPHDLGKINVEIDHAESIAAQPAVTNFSPSYVSHSPVHI DESMLNPPQIQKVVVEHVIRNESAHSPMRQSRIRTFSGRTPKPNGEVDYETWRTQVDLLLSDPS SPDPQKVRIILESLLAPAADIVKHLGLNSSPSSYLNQIESAFGEVEDGEELFATFLNLNQNAGE KPSAYLQRLHTLLTRAISRGGANATDSRKHLLRQFCRGCWDQTMIIGLQLEHLKDHPPSFSELL LSVRTEEDKRAAKLDRMKKHLGSTRAAAHAHSVYGMPVNVEAQSEPFKKCQQDETQKLKGEIAT LKKQVAYLLKKGEVKECEIKSEKNSREDTVTGDCLVVSSNVPSEFTTMPRPWFCFKCGEDGHIA NRCSKEPNPELVRKKNLQLRQRREKYRELHETSPLSLNL
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Derived: Positions 34568715 34574762 Accession No chr12 Zebrafish.v4 |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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