Repbase Reports |
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| 2005, Volume 5, Issue 1 |
| January 31, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 3 |
Gypsy-15-I_DR |
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An internal portion of the Gypsy-15_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 00-Jan-2005 |
Accepted: 31-Jan-2005 |
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Key Words: LTR retrotransposon; endogenous retrovirus; Gypsy superfamily; gag; reverse transcriptase; integrase; Gypsy-15_DR; Gypsy-15-LTR_DR; Gypsy-15-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy-15_DR, a family of LTR retrotransposons from zebrafish |
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Journal: Repbase Reports 5:(1) p.3 (2005) |
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Abstract: Gypsy-15-I_DR is an internal portion of the Gypsy-15_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-15-LTR_DR. Gypsy-15_DR is characterized by 4-bp target site duplications. The internal portion encodes two proteins: the 628-aa gag Gypsy-15_DR1p (pos. 112-1995) and 1554-aa Gypsy-15_DR2p polyprotein (pos. 2022-6683) composed of the protease, reverse transcriptase, and integrase domains. PBS is complementary to Arg-tRNA. The internal portion is flanked by 99% identical LTRs. Gypsy-15_DR1p: MDVVRRENITVANSLIVSGLTLTELDNELEAYLLRYGSIRRNVIIDDPASDFHKLLIVEFNENS AFQTLHPHLPLTLGSLSDPSITFRVRALAAVCDPPVVSTATEGYLEQLKAIAKESGRPFQTVLQ EELEKLKETHSVDQTLAESQKIEVADTQSRDNTLISESPNVAEIDPQDSESKNPTKNRIIYVSP PLPETTADDNLTTVFPSSSTNIMGDPQVQRMVVEHVVKTSDAMMSQQTSIRLRVFSGKSPRPPN EPDYDTWRASVDYLLNDPSISDLHRTRKILDSLLPPAADVVKHVRPPALPAVYLELLESVYGSV EDGDELLAKLMGTFQNQNEKSSDYLHRLQVLLSAVIRRGGIKESERDRYLLKQFCRGCWDSRLI VDLQLEKKEGQLLTFAELTILIRTQEDKNASKEERMRKHFGMTKPANVYPKTRAISNQVSACAC DVSSTYSSEAGSLKKQVAEIQAQVATLKQSPDKKSIKGQSERAELVALKRTVEDLCVQVAAVKA SVAEGLKGNNPEQSEIARLQRQVAELQAQGIVQKAYQAPHMQRSPGTEIGRALKKEPLRTNRPR PGYCFRCGDDGHLAVNCENPANPPKVEEKRLKLREQQHQWDILHGRPAQFLN Gypsy-15_DR2p: MEAKLYNSRPGCYKQIPELSQTTVSFKHLPKGLVGTKCTAQVTIGGMEVNCLLDTGSQVTTIPH SFYKAHLSDFPLEPLKNLLEVEGANGQAVPYLGYIELTLKFPKEFIGAEVEVPTLALVVPDLTS FSQILVGTNSLDVLYGKCAQDCAADVKSSFPGYQAVLKVLEARWRQASSETLGYVKFKGNSPEI VPAGGMVVLEGQAHFNGPHTEKLVTLEPPSVPLPNGLLIASCLHTSPNKRLSKLSVLLRNTTQT DIAVPPKVMLAEIHAIQSVLNQHHQSSDAKAEESIPTCANLTFDFGDSLPTTWKERITKLLNSM PEVFSLHDLDFGHTKKVKHQIKLNDETPFKQRARPIHPQDIDAVRRHLQELLVTGVIRESDSPF ASPIVVVRKKDGSVRLCVDFRKLNAQTIKDAYALPNLEEAFSTLTGSKWFSVLDLKSGFYQIEM EEVDKAKTAFVCPLGFWEFNRMPQGITNAPSTFQRIMERCMGDLNRKQVLVFIDDLIVFSDTLE EHESRLLQVLNRLKEYGLKLSPEKCRFFQTSVKYLGHIVSHNGVETDPAKVEALKTWPRPRNLK ELRSFLGFAGYYRRFVRDFSKIVKPLTDLTAGYPPLRKSCNTKQKDCEYFNPKAEFDTRWTTDC QDAFDSIIDNLTSAPILGFANPKHPYVLHTDASTTGLGAALYQEQEGQLRVIAYASRGLTKGES RYPAHKLEFLALKWAVTSKFNDYLYGAEFTVVTDSNPLTYILTSAKLDATSYRWLSSLSTYNFK LQYRAGSQNQDADGLSRRPHGELVDDLTSLKERERIRQFTLHHLMESEDESPVVMAEVVKAICE KHQVVGSPQGLHCIPSVTLVESLTHCVDVLPYEFQHEDEHGLPSLPHLSQAALAELQRKDPELK IVIERVESGVKPCKLRELSSAVSLWLKEWKRLELRSNVLYRKRQEHGASSYQLALPTSLRNTVL QSLHDDMGHLGIERTLDLVRTRFFWPKMSHAVVQKVKTCERCVRRKTPPEKAAPLVNIQTSRPL ELVCIDFLSLEPDQSNTKNILVITDHFTKYAMAIPTRNQTAQTVAKSLWDHFLIHYGFPEKLHS DQGADFESRTVKELCKVAGIHKVRTTPYHPRGNPVERFNRTLLQMLGTLENERKSRWKEYVKPL VHAYNCTRHDTTGYTPYELMFGRQPRLPVDLAFGLPVDTPNKSHSQYVENLKNRLRESYEMATK NAGKIAERNKQRFDKHVVALTLEEGDRVLVRNVRLRGKHKLADKWEQNVHVVVKKAHNLPVYTV KPEGKDGPLRTLHRDLLLPCGFLQSNKLVEPPKQKPARKPLTRFSLNNEMQESDLISENSESEE EHIVSNVPEGTLSFETQIIVGPEYIPVGESGVSLTVLDPAVEDVSVPESVVSNPEEPAKKHLPG VEPVEKETNELIEVEKNSNALESSNTVPFVLTEKNSELEQSSELWSESPDQTAKNVLDSFEWET EQNLIPSNVGHTEILQNEQPTCNEPDDILLRRSQRERRPPKKFEYPQLGNPLTLVIQSLLQGLD TALCSSLEKSVVAPVRHL
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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