Repbase Reports |
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| 2005, Volume 5, Issue 1 |
| January 31, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1 |
Gypsy-14-I_DR |
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An internal portion of the Gypsy-14_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 00-Jan-2005 |
Accepted: 31-Jan-2005 |
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Key Words: LTR retrotransposon; endogenous retrovirus; Gypsy superfamily; gag; reverse transcriptase; integrase; Gypsy-14_DR; Gypsy-14-LTR_DR; Gypsy-14-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy-14_DR, a family of LTR retrotransposons from zebrafish |
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Journal: Repbase Reports 5:(1) p.1 (2005) |
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Abstract: Gypsy-14-I_DR is an internal portion of the Gypsy-14_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-14-LTR_DR. Gypsy-14_DR is characterized by 4-bp target site duplications. The internal portion encodes two proteins: the 572-aa gag Gypsy-14_DR1p (pos. 100-1815) and 1518-aa Gypsy-14_DR2p polyprotein (pos. 1845-6398) composed of the protease, reverse transcriptase, and integrase domains. PBS is complementary to Arg-tRNA. The internal portion is flanked by 99% LTRs. Gypsy-14-I_DR1p: MDVVMQEGIKIPNAIIISGETETADDEEFLKILQKHGSIVRSVKIQDPESEFNQDVIIEFDSGS ALQSLEPLLPYTYQLTSDPNITYLVRSLSSVYTQQLGGSATKSYLKGLKEIAKLSGANFEAMLS EMLTEMSAVVLPASSVSEAPDKPPITPSGQEPISGKTSPVMAQPSNEGNQEMHQTAAHVADSSV LTSPTILNPPEVQRLVVEHVVRSGEGVAQAHIPMRLRLFSGRKPRPANETDYDTWRSSVDLVLK DPAISDLHGSRKILDSLLPPAADVIKQLSADAAPSAYLQLLDSAFGTVEDGDELFAKFMNTLQD AGEKPSAYLYRLQAALNIAIKRGGVLASEADRHLLKQFCRGCWDDGLIADLRLAQKRDDPPTFA QLLLMLRTEEDKHTAKTIRMKQHLGSSKQRALMNTQRIWVCDEPKQSTDCNVLSLATEAKELKK QIATLQSQLAKLATKSEAPKKLASQTVDRKASFKDKKSTKPSVESTMPMHYKQTDKPRPWYCFQ CGEDGHIASSCDSEPNPALVAEKRKLLREKQSQWESQNNMAKAALNQSQFLLRDSQGLKH Gypsy-14-I_DR2p: MQSHSSKIKDGKLPRGLVGERCIAQVTILGQKCNCLIDTGSQVTTIPLSFYDQHLSETPINSIS DLLEVEGANGLSVPYIGYIELNITFPAEFIGTSVELPTVALVVPEPESCTMPLIIIGTNTLDTL YDEHLKTSSMTFQPSLFGYRTVLNTIRLRHKHNAGALGQIRLRSKVPEVMAAGQTVVLEGIAHM HGFPTDKWIVVEHPSISFLPGGIVVKNCLLTLPSRRYSHLPVVLTNETDHNITIPQRCVIAEIH ALESVLSSDNAIPKQGFQSDEPKVIKEEEFILNFGDSPLSQEWKDRITKKLREMPEVFAQHDLD FGHTQKMKHCIKLHDESPFKHRARPIHPRDIGAVRKHLQELLLSGVIRESESPFSSPIVVVRKK NGDVRLCIDYRKLNLQTIKDAYALPNLDETFSALNGSKWFTVLDLKSGYYQIEVAEEDKPKTAF VCPLGFWEFNRMPQGVTNAPSTFQRLMEKCMGDINLKEVLVFLDDLIVFSASLEEHERRLLQVL ARLKEYGLKLSPEKCRFFQTSVRYLGHVVSEQGVATDPEKIEAIKTWPCPRNLKELRSFLGFSG YYRRFIKDYSQIAKPLNELTSGYPPSRKSCKKAEKEYQYHDPKEPFGGRWTATCQRAFEILIEK LSTAPVLGFADPKLPYVVHTDASTTGLGAALYQEQNGKQRVIAFASRGLSYSEARYPAHKLEFL ALKWAVTEKFHDYLYGGTFTVITDSNPLTYLLTTAKLDATSYRWLAALSTFSFRLQYRAGKQNV DADSLSRRPHESLPEDQLSVKEFERINKFVEYHTMDTENPQNTDRDIIRAICEKHSVQQSDDSG VTLVESLAIHPDAVPECFEQEDSLNGLAALPLLMKEDLAERQRCDPVIREVVMCMESGEKPLPA LRLEYPDLPFYLREWDRLELIDGVLYRRRREGDSVNFQLVLPEDLRSFALNSLHDQMGHMGTER TLDLVRSRFYWPRMGTEVEHKIKTCSRCVRRKSLPQKSAPLVNIQATRPLQLVCMDFLSLEPDK SNTRDILVITDFFTKYAVAIPTPNQKARTVAKCLWDQFIVHYGFPERLHSDQGPDFESHTIKEL CAIAGIQKIRTTPYHPRGNPVERFNRTLLNMLGTLEEKDKSHWKDFVKPLVHAYNCTKHESTGF SPYELMFGRQPRLPLDLAFGLPCKDCKQVSHSQYVQSLKSHLKESYEVASQNARRIAEKNKIRY DKHVTNSSLEVGDRVLVRNVRIRGKHKLADRWESEIYVVVKQAANLPVYTVRPETKDGPLRTLH RDLLLPCGFLPASKIPDPVVSKPIVRHNTQKNPDSQILDSSVSVLEMDNDIPEMMCGAYPIDET RFTTVHQVLRPNVSDEVPHNPEVIHSRSADKVAQSDQSSDLPADVPEQAPPTENIREHLPVGVP TDSLPDVSEITESSPIPDAKSVNDQENSQEECSGQTQTSDEEGNDLLEDLPRRSTRQRKGPKML TYPQLGNPLMHVVHSFFQGLNTVLLNALDNSESLNDLPGKSNIQDV
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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