Repbase Reports |
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| 2004, Volume 4, Issue 9 |
| September 30, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 246 |
hAT-1_SP |
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hAT-1_SP, a family of autonomous hAT DNA transposon in the sea urchin genome. |
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Submitted: 00-Sep-2004 |
Accepted: 30-Sep-2004 |
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Key Words: Autonomous DNA transposon; hAT superfamily; transposase; hAT-N1_SP; hAT-1_SP |
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Source: Strongylocentrotus purpuratus |
Organism: Strongylocentrotus purpuratus |
Taxonomy: Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: hAT-1_SP, a family of autonomous hAT DNA transposon in the sea urchin genome |
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Journal: Repbase Reports 4:(9) p.246 (2004) |
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Abstract: hAT-1_SP is a fossilized copy of an autonomous hAT DNA transposon. It is flanked by 10-bp terminal inverted repeats and share common 100-bp and 70-bp 5' and 3' termini, respectively, with nonautonomous hAT-N1_SP. The 595 hAT-1_SP transposase is encoded by 3 exons (CDS pos. 2100-3185, 3545-3702, 3967-4507). hAT-1_SPp: MPSKVWRVFTKVSSTTVKCTICDRVLGYKGGSTGAMLNHMKTHPNSIEDDRQPRLSSFNRQCNP DRAQRISNLIADMIAKDGLPINFVEGEGFRALMHDVEPDFTIPSRQTVMRILELKFLEQKTKIK HWMSGCEHIAITTDCWTSLGQEGFMTVTAHGIDKEWIKRSFVLNTSPVASLDDNDEDNDPPLPQ RHTSQALKSQLREVAQTWEINNKVCGVVHDNAANVRVIGEAVGAPDVPCTAHTLQLCVNAGLNS NGQLQRVIGAVSRLVGHFKHSVVASQALTAKQDQHNLPKHRLIQSVKTRWNSVYDMFARVTEQR WAITSVLSDERLTLHRDATTLQLKDEHWSIVDNMGKTLEPFLVATKVLSSEEHPTASTVLPMIT GLLDNFLIVEETDSGIVRQFKETTSEQLKRRFHIKSARERDEDVEIEDVSALHLASALDPRYSN LTYLPRAMRNVVKNKLNELIPERDDEEQNADVEQPSTSLDFLITGRRFTAPQQQRDSVEEIHTF FDLPVVPSTADAVAWWKANEASFPLLGNVAKRFLTIPATSVPSERVFSTAGNIVTKKRSCLLAE NVNMLIFLKHNAKSIPLI
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Derived: Positions 227 6532 Accession No Contig26222 BBBCM Spur20030922-genome |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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