Repbase Reports |
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| 2004, Volume 4, Issue 9 |
| September 30, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 235 |
GYPSY6-I_CB |
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Caenorhabditis briggsae family of LTR retrotransposons - a consensus. |
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Submitted: 00-Sep-2004 |
Accepted: 30-Sep-2004 |
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Key Words: LTR; Gypsy clade; 5bp TSDs; GYPSY6-LTR_CB; Cb000288; GYPSY6-I_CB |
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Source: consensus |
Organism: Caenorhabditis briggsae |
Taxonomy: Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis |
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| [1] |
Authors: Pavlicek,A. and Jurka,J. |
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Title: GYPSY6_CB - a family of autonomous LTR retrotransposons. |
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Journal: Repbase Reports 4:(9) p.235 (2004) |
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Abstract: The internal part contains one large putative ORF and thus the family was probably autonomous. Flanked by 5bp target duplications. Related to GYPSY5-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY3-I_AG. LTRs are listed as GYPSY6-LTR_CB. GYPSY6-I_CB_ORF: 22-4126 (1368 aa) TGDQAKAMADLTQQIASLISVFGQLVPSQATTSTNGSQLVESISTRIPNFIYEPDEDLTFDSWYNRYGDV ITKDGSTLTDEAKARLVLSKLNTKEYSHFANRILPETPNSLKFEDLFPKLKETFKSTSSIFRKRQEFLRT EYDGSSIEEYTGLVLRRFTSSEFKTMTDDQTCCMVWINGLRDNSYSDIRTKALQIMEAKPTCTLLELEKE IKRLLDVRADSKSVCSAAKQNEINAIHQKASSRDKSQKPPPSPCFKCGGKHWARDCQKQVKCTLCQKDGH IAKFCRTKKRDANVQKGNFSKVKSVIVGSATNSQRNRIYRVVTINGMKIQMQLDTGADVTLIRTKDWNRL GRPSLLAPTIQVKSANHQPIAVKGSFQCQFNLNGTSATGIAHVAETGTLLGTDWISKDKKLWNILNPSQI SAVHSDAGSACNYLDITRNRLKAELNNEFSDVFKPELGRCTKTKASLLLKPDAKPVFRKARSVPFAALPT VSEELDRLQQAGVISPVDHSEWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIFVTLNGG KYFSQIDLAEAYFQIELDEQAKKMLCINTHKGLFSYNRLAFGVKSAPGSFQQIMDSMITGLEGTAAYLDD IIISGSTIEEHNQRLMALMKRINDYGFRIRLEKCTFLMERITFLGFIIDKDGRRPDPEKIAAVQQMPPPT NDGQVRSFLGFIQFYGSFVKELFRLRPPLDALTKKDAKFLWTSQCQNSFDRVKQILQSDLLLTHFDPKLP IIVAADASQYGIGAVISHRFPDGSEKAIYHISKALTAPQRNYSQIEKEAFGLIKAVTKFHKFLYGRHFTL KTDHKPLLSIFGDKKGIPLYSANRLQRWAIILLNYDFTIEYVNTNHFGQADALSRLISDQIQQKECEDRI VAQVESEVITNLVSACERLPVTANMIRAASKKDPLLNQVYKYVVSGLWPKIIDKSSQISFFHHRRDQLSI VADCIMFNDRIVIPSTLKARVLKMIHRAHPGIVRMKQLARSLVYWPSIDKDIENMVRSCDQCAAVAKNPI RNTLCSWPIPTAPWQRVHADYAGPLDGTYYLVVVDAFSKWPEVFPTTSITTTATINILRKVFSQFGDPQT LVTDNGTQFTSSGFENFCKDRGITHSRSPPFHPQSNGQAERFVDTLKRSLGKLKGEENADTALYVFLQSY RSTPCTSSPNGSTPAENFIGRKIRTFLDQLRPKDQLPNSHDTEMEKQFNKQHGARSRSYQVGEKVYVKDY RNINTATWIPGTIQKRIGQTMYHVAVNDTVWTRHTNQLRRRDAPIQFDVPLDTMDPIDVTPTATQLPSSS THTTPSPVNTPAKPKTPPPKQYRKSTRIINQPPRLVMKPNQKSYH
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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