Repbase Reports |
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| 2004, Volume 4, Issue 7 |
| July 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 200 |
RandI-5 |
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RandI-5 is a family of non-LTR retrotransposons - a consensus sequence. |
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Submitted: 00-Jul-2004 |
Accepted: 31-Jul-2004 |
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Key Words: non-LTR retrotransposon; RandI superfamily; AP endonuclease; reverse transcriptase; RNaseH; RandI-5 |
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Source: Chlamydomonas reinhardtii |
Organism: Chlamydomonas reinhardtii |
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: RandI-5, a family of RandI non-LTR retrotransposons from the Chlamydomonas reinhardtii genome |
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Journal: Repbase Reports 4:(7) p.200 (2004) |
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Abstract: RandI-5 is a family of RandI non-LTR retrotransposons. Approximately 50 copies of RandI-5 are present in the genome. They are ~1% divergent from the consensus sequence and are likely mobile. The RandI-5 elements are usually flanked by 10-15-bp target site duplications. The 5'-terminal portion of the consensus sequence is incomplete. The consensus sequence encodes the 2457-aa RandI-5p protein (nucleotide positions 1-7367) composed of the reverse transcriptase (aa pos. 460-750) and RNase H1 (aa pos. 1930-2100) domains. RandI-5p: XXNAADRTGPLDSADRLHQRFLAQTGLLPARGTMTTEGEWSYEQTQHGVTTHRSRIDDILMCTT TLTACPSPHEHVSTVAGNFDHKPVHIKLPADALHLWEAPQPAAPPATTSEDSPRWSRVTLPITK KQLAAAAAHLEDIMVEATADLHNASKGAVQVIDNALKQHTKNPTTYPANTMQWDLAHNRIVQQT DVNQLAERLGKALEDGLTCLLEECTLKPPHTGKHHLSRSAARHLKPLWDKEVELKQTLTNLTAG GAAPDTTTEGEAATIRGQIKDCQAQHRQLVADRAKAQREAAAAALQHTLATRPAHGHKRIFQKE ATERGLPAVRNPETGEVVTDPPSILTALDGHFRKLSAPPRGPRTGEYRLSPGATRGYPFELPNA TDAFTLERNRHPEAHSMLSSMADPANFDHCIAHLSRNKATGPDGIPNELLRILPHGMKRALHNT LKIMYVKSTIPESWATSDTVLLPKPGDALDIKNKRPIALANTCYKLYTSMLTLGIGELAGPLQL FSESQEGFRAYCNTERQILNLVHVLEDAALYGKDVYAVYVDYSSAFNTIDQDRLLQIMFDLGLP DDLIRAVRNLYAHATTRIRTEHGCTSAIPIERGTVQGDTLSPVLFILFMEPLVRWLHAGGRGYR YGCLSPEDNARYHCSAAAYADDLAALTTTLEDLQIQCDKISDYADWASLRVNHTKCAATAIWHN KSRSTPTLDGPTGQATLNAMHRELTNKLRIGNTTVPYYPPTKPYKYLGVQLTFSLDWKAQVSRV TETVKEKGTAIATSLATPAQRLRMLQQCVHTSIAYAFAAMPYTKQDIANFDATLAGYAKRCYGL PRSFPTRTTLLPIDEYGLGLGSLLPQYARVANRALVLALNDTGRLGVVTRALLPRQHSLAGASL AHHLPADRGRFFTTLQQMTLAREHGIQLFYKGTPYATPTWSIVEALDAAAAARAAAPLPVEHVL PLAELQLEFSHLVDRNTSRHLISTRELEKLLGASRVRHKHKVALNRLSLALVATAGLDGDQMPP EKHGSPNPLPPTQRVIPPLEELQALSARNDPRPPGMAPPLTALMTGGPAPQPLTPAPNTTTQMD IEEASPLYHNPPLQYTPTALGQMAPTPAPAADTAAPVAQPEANLRTRPRKTPVMRTPTHPTAHS RRVTKHAAQKARIAENTRTTPDDLLTGDKAAISTAMRLTNGDESLAVGTRGYETARSVFTALAK DMSRHNHLCKPHPRDPPSFNNRTPVTRTQRPLAPAITTLLTANATMPSTGAVQTYLHQGQPAAA AAEDPMDVDAAAPEHDQMEVDDSQHDLMEADDRQQASPLRLSRRRGKQTIWKLARERVVKDLVH PPTDDCTNGDAQLTYDLDNDGQELAAILYRTNQQTATDKEIARKRKAGEDTTNTREPYFAVQWK PSVIPPGLVTAFSRMGYATVTDVRCYKHPLQARPRATQPHPDGAGTTDADTATAAQPAGILPAH APPTAPAPGPLETTHAPRAALFSSRSTRLLRQVTWANSNERERDLKHDLEWEELISEYTNRLAA GPDAPARPTRPPKDRNLTMRQRQGRHDDDPDDQATRARVTRAATTISTVPSDPYHDVSPPGSYA ITTPTAGRALPREAHVYEPSGRWLGMLTYTRLQTLWESFNRTNNNRTKAFEEAVAALLHRYRRD PGQTDHKTAPQHQTSLPSATVRAVVRSLRNTGRGRVKEMFASPLNHTTDADEYWSREAADVVFG AQHDAYSTAWTGLHYAHPPANPDASRQALVWALASAETVNNSPEPTLTILVLPKCATYPHTQWL THPLCRRLATWTNGELDSPGTAGMEPGLGTDVPLQKQRGAILVAVGNTAGLNAFTQSWKGLRSS LVAGPHAPATVADTHLGSGTLNTSCPHIPRHTSKHAKYLATHLNIATVVTPDEAPATPRLNRTQ FQRTLPLAHNPEEIVWTDGSVSKTTTENGRELQVAGACAWHKDRVVYVNPNGFGCTNTITRAEL AAIRAALEEFGGETSMFAKKTLTIASDSAASLYLIKRAIDEPRRLHLSKHKALLSSIADLLHAR AKRDAHTVFLKVVSHTGLHGNEEADKGAADVATSTKPADVSELADNNPHAAHWWPATTRTREDG STTVHYISDLNRGLLKTLDPSSHGGHSKHTLYTTKWAESAPHLDTRASTAYMTHPGAGHSLRRF IQNARQGGLICPARLALFKLRASDTCALCAPIHQRAGSPPERGNAGHLAGHCAHPQLVGARIAK HNAAVRMIAECLHHGANGGGYMLMDASSADARPEYCAGTCPPKWMLRNNIPEADRKRMRPDILF IPSLPRSDVGASGPRGLTTAGRRQHKVYLIEVGYTSDLHHSEKCDQKQAQHTRLADALRDAGWD VVYKKEQIVTLGHGGTVSNTLEPLLRSLGATTTSAKSCCSRIHMHSVISLRTTSLLYYRLEREM GIVNSRQVGPTGGATAAGPSPRDPG
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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