Repbase Reports |
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| 2004, Volume 4, Issue 7 |
| July 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 199 |
RandI-4 |
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RandI-4 is a family of non-LTR retrotransposons - a consensus sequence. |
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Submitted: 00-Jul-2004 |
Accepted: 31-Jul-2004 |
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Key Words: non-LTR retrotransposon; RandI superfamily; AP endonuclease; reverse transcriptase; RNase H1; RandI-4 |
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Source: Chlamydomonas reinhardtii |
Organism: Chlamydomonas reinhardtii |
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: RandI-4, a family of RandI non-LTR retrotransposons from the Chlamydomonas reinhardtii genome |
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Journal: Repbase Reports 4:(7) p.199 (2004) |
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Abstract: RandI-4 is a family of RandI non-LTR retrotransposons. Approximately 50 copies of RandI-4 are present in the genome. The 5' terminal portion of the master RandI-4 element is not completely reconstructed. Most of RandI-4 elements are shorter than 100-bp and represent the 3' terminus of the RandI-4 consensus sequence. The consensus sequence encodes the 2548-aa RandI-4p protein (nucleotide pos. 1-7644) composed of the AP endonuclease (aa pos. 130-350), reverse transcriptase (aa pos. 770-1070), and ribonuclease RNase H1 (aa. pos. 2030-2190) domains. RandI-4p: RANDIPKLGPTPAALAQDPPTNPTGGPPAGPNTTNSPSPPTSANPGPAARSNTATRIVPKPAGP TKRPARRTPNPTPKLRKLATGTPSAPPPAKRLHQTTIATSHKRRHTATLQNTPTEPTNGQAQAS PSPPPDGRISILTLNTRELLSHHESILHTVTTHTPDILFLTETKIPTRLHYSMGSAKKGLSSHY QTYTSNAPYNPREGTRPHAGVMVGVTHRFSRPSGTTDMNAHNTDSRLAGHVCHIRIAPPHSTPV HAIGIYAPSDDATRAAIYKYCTDQAAKTTAAKEHLLIGGDWNAVLFPSDRSTGQLNATDRAHIA FTTSAGLHPLTPPTHEHPRPHTYLQDQATAPHMSRIDDLLVSHHTHATITTTGGGQEAVHECGD ALDHRALLSSVPLAALRLYPFPTAPAAPSDPDAWVNYHPPTKDQREKARIKMEETIGQEIADLL NTLHPAHLAITNKLYPAGLTPAQAERNTPSPAEFRALPEVSAADTTSISNTLESILQKCLDVLK SYCDKKPPRASTTSPRHHTSKTVTRLLTATSKLKERLTAALTVTNAAGATPPTTSPHPAPTPPP NTTSPTPTPPTPAEADTPTAIRSQLLNARTLLRAAKKEARKLNTKRAARAFRRLVATQPKRAHQ KIFDETDQPRGTPALTDPTTKEVHTAPEKILSSIHQHFTAQLLPINGPRTGHYDIPHSEKQYPW SRPDAPDRMPALSKPTDAPATLLPGIADSTTFFGCVNHLSRRKAPGPDGIPNELLQTIPTSLQT AIHQLMTLMWVKAHIPTHWTQSDTVLLPKKGDPLLIQNKRPIALANTLYKLYTSLITVNAALFS EQAHIFTESQEGFLRGRNTERQVQNLLHAIEDAATTGRDLFLLYIDFTSAFNTIDHDKLLIVMH DLGYPTDLIEVVRDLYGKAATSVRTEHGTTPPIPIQRGTVQGDVLSPLLFIIFIEPLLRWLHVG GRGYQYGCLTKAENDKHNLSSGAFADDLVTATTQISNLRIQVEKIEKYAAWGGLKVNVSKCQLQ GILHGRARADPTLGGPRSKPHQAALARMLEGQIRIDGTAIPYKPPHESYKYLGIHITPTLDWSA QVQYIREKIKKRGQRIATSLATPDQKLRMIQLTIHPAVAYSLPFMPYSTHDVTSLDSLIASTAK MCYGLKRGFPTRAILQPTNALGLGVGSIRELYVRRAGKALVQALNDGGRLGAVTRAMLHLQHSV AQKIPADQLRTQCRFYTSLRQLSLITDAGLELTQQGSAYHTTLHGLSALLARTVPPGADAEQAL PFRLIQPLLELTSDFRELLTPDRTCVIDANTLKNTWPRAQRRHRLALNRLTLALHAETRTRAKT HNSTAPLTTAQRTLPDGHTFTGLHTAHTAPAAVDWGTLNRFLRQRAPATGQTANAGETAAATTA AATTAAAEPEEDHHAGENHAPAQTRRPGTQQRKRACIKMVREPEGRGSPPADAPAAFDWDPSLD PLTEAHCADLIHTAPSLLGKSKPQNPAAHLRGLLLGPTPPATFTHRHKLSQEEQDAYLAATSDT WKHFSETYRTKALTTTNTLYGQQERVQQVIAHTTSKGAPFYRVQWEPTVITPGSLTLYARNRYR PKPGGLTWLLTPGNEPRVLVEWEDLEEPAAILDAQDNKQELLDALNARLAVPLGPRPPPPATDT HLSHDQRQGRWTDASNDTARGQRTLRHYVDINVEPCNPSRDIHPTQAYTVQLGTVLDPGSPACG THLAHVYDPRGRCIGTISAEQLSLLWQRYQHAQTTWPKVHAKHDQGRGFAAAIARLLLRYKPGG GSKSHPVTEKGECMLCEGLTQTLHTAIGSTTELFASPLNVSDAATTYYTLYEEDMLFGANYDAY SQPWDGVAVACPEPNTEDGAHAVRWALAWAEHTETLTNTRNPPTTATLLILPTQRNAPYTRYLA HPRVTLLGSISATTTHALLGQIHNDTGITLKHDLVLVSNTPGAQLAQPIRDALGTSLYLSGMPV DPQPQLTWAHTRWVTKQVRRMTRTRPAAPRVTPPPVPATPATLAPFAATQPLRLNPYEGFYTDG SVQKDALGQPSAWGAAAIDARTLRCYQIDVNPGQHGCNTITRCELSAIHQVLKLDEVQALPEVT VYTDSAASLFLIRKTINQPQLLTFSKHKALLDNILALLKRRSHAGRRTNLLKVKAHSGIAHNEL ADQAAVKTAKGEQIPGAEWLVEESDNDPRSKYYWIRKIIKPTVEGVPREKNEGHYAHDLNRGIA TLAAPHIAQGHTRETLYTGFVANAIPDLDIKSSTRTMNLQSGRHRKAKRCMDYLYGQLWNNKLA ARFGRTVTGRRAPRAGPDTPAPCPLCRGPDSGGHILGGCHNPQLRAMYIKRHNIAVQTIARAIS RGDCGGCYMVMDATSKADLPDYAADNRLPPWLLPDQEGKPAGRHLHYRPDILLIPSISLAAALN PDFVVLPSEHDTIHIIEAGYTADTNHAAKQHEKAQQHQALAADLREAGWKVQYTPQSAISLGFA GTIRKDLHPLLTSLGVTSHKARQCCDTLHDHAVATLNHIVLTRRRLERGLPPGDPGGT
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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