Repbase Reports |
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| 2004, Volume 4, Issue 7 |
| July 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 197 |
RandI-2 |
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RandI-2 is a family of non-LTR retrotransposons - a consensus sequence. |
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Submitted: 00-Jul-2004 |
Accepted: 31-Jul-2004 |
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Key Words: non-LTR retrotransposon; RandI superfamily; reverse transcriptase; RNaseH; RandI-2 |
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Source: Chlamydomonas reinhardtii |
Organism: Chlamydomonas reinhardtii |
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: RandI-2, a family of RandI non-LTR retrotransposons from the Chlamydomonas reinhardtii genome |
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Journal: Repbase Reports 4:(7) p.197 (2004) |
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Abstract: RandI-2 is a family of RandI non-LTR retrotransposons. The 5'-terminal portion of the consensus sequence is incomplete. The reconstructed consensus sequence encodes a 2064-aa RandI-2p protein (nucleotide pos. 2-6193) composed of the reverse transcriptase (aa pos. 90-350) and RNaseH (aa pos. 1570-1730) domains. The genome contains ~100 copies of RandI-2 that are ~1.5% divergent from the consensus sequence. RandI-2p: XKNSAPDTFTLHSATTPPTHALLPSIADSTNFDSCIDHLSRNKSPGPDGIPNELLRALPQTLRT TLHNLLTLMWVRAHTPASWTASETVLLPKPGDPLLLKNYRPIALANTTYKLWTSLITVAISDIS HDLDLFSETQEGFLRYRNTERQTLNLVHALEDAGLTKQDIYVMYADFSSAFNTISHDRLLEIMW DLGMPHDLIRVVQNLYSNARTYIRSEHGLTAPIYIERGTVQGDTLSPVLFLVFIEPLIRWLHVG GRGYSYGCLPPHLNARYNCSSAAYADDLAVLTNTLSDLRIQCDKIHRYSEWAGLQVNHAKCRVT GILHRRAMQDKGLNGPTCNRTLRSMLENKIHIGTTSIPYLPATEPFKYLGVQVTMTLNWGPQFA YLCKNITDKSLSLQTCQASPEQCLRIIKSCIQSVAAYSFAVMPYTENDIRTLDNMIARLARTCY RLSRGFPTRAVLTPAEMSGLGVGSLLPIYVQKATRALTLALNDPGRLGMVTHALLELQTRIAGT TDMHKLRHESHYYTTLKQLSIMRAYNLTLWDHGAPYKGPPNTLLTAISRSPHPISHHLVLTLTQ AGLDLRNLVGKERTPEGRACLIPSDILFQHLPRNQCQHKHRVALNRLSLCLSAECDGAREAPFN QAESYKCHLPLPQRYRALPNTPAFAALLPRNATPGELTTQSTMDAHLQHMTALHPNTEAQTPQH PNGLGPRQRQTTLAHMLRTTGAPPTAPTQSPTATLTQTPTGTLPTPPLAQPMPPPLTQPTPPLT TPAGPDAPNTQTPPTVASLTTAHQQPKSKKQRPNAIKRLQQKIDADPRHDPLPPTDMRSHTEKS GFILNNDPDENDSGPPNFVMWAPHYFANVQKDMQGTNRMPRLGIPRHHSRFPQNRTRPNPTRTI PAHLADPYFLGSQVDDTNPLNPVTAYISANPPTTPPTCAYDSRPRWADTGDFMIAPEPPNWPNI TGATPGDSHDPRQADHDPQGQMRAEYMQERERLRAHLDDHPPQPRPFKRWMGIRLQLLTGKLPW PTQAYHVAQAAKQLVYSLYHDIEEISHIQAGPITKAVTAPEKGASLHTERYYEVAWKDTTIVKG AAEAYTRMKYTGTAAAHMGYGQACHKYFLRMKWDPTSEPVDKCPTLQGWTPAISEHLRKLAEPP TPTPQPKPKDARLTPAQQQGRWTQADVAASHVRRTTKQNTRIDTNPCNPYLDVHPTGRYTIQIP DTYTDERTLAHVYNPTGRHIASVTLGTLLTLKARYEHALSTHHDATSPHRSQGGFPEDLAKLLL RTRVDSKGKTCKSAPARERSLPESLKLALYNCLASTHSDPDRPVGLVERFASPLNCSGRATKYY SQHAADSLFGASHDAYTAPFDGLSLAHPDPDPDACTKALAWATASIEHLEHQATPAITFMIIPQ GKGAASRCLASPHVTILALIPPGVSASSMLDGLGAADEAASSKQGLQLLLIANTTGVQALNSNN NLTRLQTSLAELGAVPPPTSQPPGRRQPLEWPARVTLPRDRTAPPGRPYSHRAKARAKQLTRPQ APAARGLDTCPTPMPTLSALYTTRAAFPTRSSYLYDAATIVWTDGSCIKVAAGEDGNEMNKLGA CAWSQQTEHIYVEPGGLNSTNTIQRAELSAILVALEYIRPRLCLLGMTQVTIASDSLVSLYLIR RALTAPQRLLLSKHKNLLENILHELQMYADAGVPVQLLKVRSHTGLHGNEEADKGAAKVAANDM EAMGQAIRLAPDEPWSNIWWPKRNSDNFYLSDLNRGVLNSLPPEAQQGFTNNTPVLEQWAEASA NMCPTLSNRTLASSTRHPWLVKQILYARYGYLFNAQLKRRYRLGGNGNCPLCHTPDSGGHILGG CTHPKMKGAYINRHNWAVQRVAKCISKGTYGNGFMVMDAGPLADLPHYASAQRPPAWLAAERTS SPLITRLRPDILFIPNLPAHETHREGYRPPLNKARLPIYILEIGYSSDVRHLDKREEKSQQHQE LKRLLEAAGWTVHYSTNECLALGVTGAIPCNLTKLLTSQLGVTHTAARVCGERLHTHAVNSAGG IIKMRRVTEQELKPRGG
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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