Repbase Reports |
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| 2004, Volume 4, Issue 7 |
| July 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 196 |
RandI-1 |
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RandI-1 is a family of non-LTR retrotransposons - a consensus sequence. |
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Submitted: 00-Jul-2004 |
Accepted: 31-Jul-2004 |
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Key Words: non-LTR retrotransposon; RandI superfamily; AP endonuclease; reverse transcriptase; RNaseH; RandI-1 |
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Source: Chlamydomonas reinhardtii |
Organism: Chlamydomonas reinhardtii |
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: RandI-1, a family of RandI non-LTR retrotransposons from the Chlamydomonas reinhardtii genome |
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Journal: Repbase Reports 4:(7) p.196 (2004) |
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Abstract: RandI-1 is a family of RandI non-LTR retrotransposons. Approximately 100 copies of RandI-1 are present in the genome. They are ~1% divergent from the consensus sequence and are likely mobile. The RanI-1 elements are usually flanked by 10-15-bp target site duplications. The 5'-terminal portion of the consensus sequence may be still incomplete. It encodes a 3571-aa RandI-1 protein (nucleotide pos. 2-10714) composed of the AP endonuclease (aa pos. 990-1250), reverse transcriptase (aa pos. 1600-1900), and RNaseH (aa pos. 3040-3200) domains. RandI-1p: XRMHTNTPLTNLASSSLGNMWKMVARRKVERKSAGICVLICFALCMLTTNATTAGNASGSAAAD RWFDRGPPRHSSAFALLGNHDRTMPIQKWSARGLTTCTESSAKGGCSHVCNSRATGAQLPALSH TDGPIATHGINHAHGSVWRENFSFAHSMFTVHSNPANATLLSDRCSQKGIFDTSILHTTCYTAS KRAGAEPFGMSPKRPSQSPTAAKHPSFEELISSKHIPVASEPLANDVPERGRAEPPVFTANSQL YENASLLTEPPPTSSERRQYRSPSGLLSRAKVKPKPGCTNIRNVMITALQPVGEGLLSTNLKIA QACRSGVTKLCTAEGAYRSYATKTIGLLGESLLTSVLALGDLGSRHGGTMLRSGASALHSMAET AYGPQPTLNCSAPWENSPLLRLHLTLVVHFHWAGAGHVRAAMHSHTIAIRVGAHLATRSRLAIY QTAAQTGKALHTILDKAIVSLTIITATGAMYMLWTHLLHAETRTASVNSEICANGAILSLLLWG PTLTTLALSPLCVIALALGITAIPAALGLLFALTVTSILAVLCLPALLKHVVQVTRQIASATWA RRKLLLWGTAMAIILRNLYLTLPDPCSVQPAQPALWGPALVTGLLTASQATTLLTLTYAVNRTH TMPYVKPTLRGALPTDPTAPPAPADPRTHAAVNIRPPAALHWPPNPNTTYRETQRQHFCSVHAL NNSLGLAWLDPLDVLSYAKRVHAHLTATQDPNALFWKECYCPNSGAFSEFLLNHYLYHNATISN IFAYPNRKLIMRRTHFPRLNGDISKEKVLESLPVAARTRGFTVHQYTVRHTIAVRYEAGQWRVI DSVNSPIHNTVLHDNTWNTLDGEVWCLDAVRASDTATLQDALGQLREIVPPPRPPPHMEATRPV QTGPAATGRPAPEPAQHAQDNSPLRAAHRAPQHAAPHTTAPAQPHNANAGIAPRLNTTGTRQTI LNWLVRPTARNHAHMEPNQAHTNTRPPSSNTTLHIVTHNVRGLLSEILSTGQPGNLSFTLCNLA QWKADIVVLTETKLTGKTDSIKRAFRNEGYRLYCSTTPRVATARGSAGVAVAISARYSDLGCVT HHTPPPTLHGYVSHVQIKTPGSTPLTVLGIYAPEDMQTRKAIYTYCQQVVGRADACGHHLVTAG DFNAVARAHERDSPIDTADRAHQRFLADSGLRPIRGDTTTTAEWSYEQTRPGMAPYHSRIDDIL LCPATRAACTEAREYTSTVAGNFDHKPVHAELLAADLQLWPAPQAGARNPAPQQQTQQRWAEVA LPVTQKQLAAAAIRLEEALVEATADLHSATRQATQSIEHALTRHSMDPTGYPASVMHRDLAQDT SIQKADINQLAEQLASALDTGLTCLLEECTRKAPFTGKHHASRSTARVLKPLWDKEVALKTQLT NLTQGPQALPEVDAANAAAKLRNEIKACQAEHRQLVADRAKAQREAAATALQHTLATRPAQGHK RIFQKEDMERGLPAVRNPETGEVTTDSTSILAILETHFRKLSAPPRGTRTGDFRLPSNATRGYP FEKADATDQFTLDRNRHPDTHSMLPSMADTANFEQCISHLSRNKATGPDGIPNELLRILPSGMK RNLHCILQIMYVKSQIPETWAASETVLLPKPGDALDIKNKRPIALANTCYKLYTSMLTLGIGEL AGPLQLFSEAQEGFRAYCNTERQVLNLVHALEDAALFGKDVYAVYVDYSSAFNTIDQDRLLQIM FDLGLPTDLIRAVRNLYAHATTRIRTEHGSTSAIPIERGTVQGDTLSPVLFILFMEPLVRWLHA GGRGYHYGCLTPSENLQYHCSAAAYADDLAALTNSLDDLQVQCDKIASYAEWASLRVNHTKCAT TAIWHDKSRSDPNLDGPTGKATLAAMRRNMTNTIKIGTTPVPYFPPTQPYKYLGVQLTFSLDWS AHVARVTEIVKDKGTAIATSLATPAQRLRMIQQCVHTTVAYGFAAMPFTKQDITTLDTTLAGFA KRCYGLPRSFPTRTSLLPANEYGLGLGSLLPQYARVAQRALVLALNDSGRLGIVTRALLPRQAS IAGPTQAHLLPAHRSHHLTTLKQMTLAKEYGVTLYQNGSAFTAPTWSIAAALEAEAEARGVEPL PIEYVLPLADLRLELSHLVDRNTGKHLITSSDLEKHMGASRVRHKHKVALNRLSLALSMAARAG ENAPAHGSPAPLTTAQRALPDVAAIVALAMRADPLPLGMANPLDRYLQPLPEAPPAQANTTQAP ADLAPPSPAGAAQAHPGAQGAAAPEVPADGATQPSLRPPARARKPATTRRPPQNQTRARRVTKH AAQRARIAETTRTTPEDLLTGDRAAINHALRLTNGDESLPVGTRGYETACSVFQALAKDMTGHM RICHPHPQDPPSLAHAVEPRQQRRGLPPALTSRLTANAANPEPNAISEYLNNTGLPMEVNQAAA HNDPMDADSPTPPLTAPAAQAAGGHGARPSWRLARARITHDLVPRPADNRTNGDTQLTYDLDND GQELAQVLHSENKQTVTDKELTRKRKAREDTSGTREKYWKVQWKPSICPAGIVSAFVRMGYATI QNARCYKHPLATRPGPQPAQTEAEPPAETQAHAISPEEPAQAAEPAAPQPTGAPLFSSWTTKLL RHVTWAPSTDRERDLKHSPQWEELLEECKTRLANGTNQGPRPRTVRPAPDRNLTARQRQGRHDA EPLDTASRARDIRTTTTITTSPCNPYKDIVAPGAYTITTTGGTRRDPAEAHVHEPSGRWLGTIT YPRLLTLWERFRHTGNQRPNAFEEAVAALIMRYRYDPAQQDRKAMPMHQVSLPAGTVAAIVQCL RVTQAVHIREMFASPLNSSTAAHEYWTRDPADGAFGALHDAYQTAWTGLQYAHPPSTPHDARKA LMWALACAEAMRDSQEPTLTVLALPKAATFPHTQWLQHPLCHELANWSAGTAGLDTGLGTNTQA ERQKGLRLVIVGNPAGLQCFAPRLKRLVDTLKRGANAPTHISDPRTWTHTATAPTCPALPNSLL KQAKYQHANPKTIHAMADEARRFPNARFQTHHALAHDVNGTVWTDGSVSKIKTDNGKEVQVAGA CAWFSDSRVVYVNPNGAGCTNTITRAELAAIRAALAEFGGEGKEFATKKLTIASDSVASLYLIK RAINEPRRLHLSKHRDLLDSVVALLHARHARGAPTALIKVISHTGLHGNEEADKGAAAVATQEK PADVSEPADNDPHARHWWPTFTVTRDDDSTATHYVSDLNRGLTRAMAPSCRGGYANKTLYTEKW AEAAPSLDPRASNAYMTNSDASHGLRRFIQNARQGGLICPARLALFKLRDSDKCGLCAHTQRSR GSDPERGTAGHLAGHCAHPQLVGARIAKHNTAVRTIAECLHHGHNGGGYMIMDATSRAELPEYC AGMRPPSWLCPQVPAADLNRMRPDILFIPNLPRSEAERFMTSPPANKGAYPVYILEVGYTSDLH HSEKLIQKQAQHATLATAMRAAGWTVHYDTKHVITLGHGGTVPRTLETLLKDLGAKPQAAKACC TRLHMHSVTTLRGTANLYYRLEREMGIANTRCRPGGRTQGTANGGPRAGEPG
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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