Repbase Reports |
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| 2004, Volume 4, Issue 6 |
| June 30, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 179 |
GYPSY70-I_AG |
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GYPSY70-I_AG is an internal portion of retrotransposon GYPSY70_AG - a consensus sequence. |
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Submitted: 30-Jun-2004 |
Accepted: 30-Jun-2004 |
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Key Words: LTR retrotransposon; Gypsy clade; CsRn1 lineage; 4-bp TSD gag; AP protease; reverse transcriptase; RNase-H; integrase GYPSY70_AG; GYPSY70-LTR_AG; GYPSY70-I_AG |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Tubio,J.M.C., Costas,J.C. and Naveira,H.F. |
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Title: GYPSY70_AG, a member of the CsRn1 lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4:(6) p. 179 (2004) |
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Abstract: GYPSY70_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its reverse transcriptase, RNase and Integrase is phylogenetically grouped with representatives of the CsRn1 lineage of other organisms. GYPSY48_AG, GYPSY49_AG, GYPSY50_AG, GYPSY51_AG, GYPSY52_AG, and GYPSY53_AG are other members of this same lineage in Anopheles gambiae. The GYPSY70-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 315-aa GYPSY70_AG1p gag-like poliprotein (pos. 694-1638) and the 1064?aa GYPSY70_AG2p pol-like poliprotein (pos. 1642-4833). The sequence of the LTRs flanking GYPSY70-I_AG is deposited as GYPSY70-LTR_AG. GYPSY70_AG2p: GYAGDIGSQVATISPVSSRLMVIDRRTNQRYLIDTGADVSVLPKPANYTPPTPSTMRLFAANGT PIMVFGESLRTLDFSLRRPFVWNFIIADVSSAIIGADFLRHYHLLVDLRQRCLVDAQTNLRVPG LPDTTRQTAVKVCDANSPMADLLNEFPTLITNSPGVRMQSEVVHRIETTGPPTFARSRRLPPDK YQAAKAEFDSLVQLGICRPSSSSWASPLHMVKKADGSWRPCGDYRSLNARTTPDRYPLPYLQDF TMQLGGKTVFSKVDLQKAYHQISIHPEDIPKTAIITPFGLFEYVTMPFGLRNAAQTFQRLIHDV LRGLNFVFPYIDDIIVASKTPEEHREHLRLLFARLTQHGLTINLAKCEFAQPEISFLGHRVTSE GILPLEEKVDTIRQFPKPNTVMELKRFLAMINFYRRFIPHALRAQGPLLEMIPGNKRRDKSSLT WTPATDTAFEDCKRQLAQATMLVHPVPSAELSLWCDASDFAAGAALHQVIDGQMQPLGFFSRKF DNAQRRYSTYDRELAAVYLAVRYFRHQLEGRSFHIYTDHKPLVYAFRQSLDKASPRQARHLDFI GQFTTDIRHVEGQENVTADLLSRIEPIQSSTSIDYEKLAEDQTRDPELADILSGKTRTDLVLQR VPIPGSSMALYCDCPAGIIRPYVTKPFRQQLLRAVHQMSHPGAKTTTKLMTERFVWLNIRRDTR DFVRHCLACQATKVQRHTRSPLGRYPVPDARFAHINLDLVGPFPISNGHRYCLTIIDRFTRWPE AIPIPDITSTTVAAALLSGWIARFGVPSFITTDQGRQFESTLFAELNQLLGIKHLRTTAYHPQA NGLIERWHRTLKAAICTKNTAHWTDHLPIILLGLRTAYKDDIKASPAELVYGSTLKIPAEFFNS SPMTSLPDTTEFTKSLKYAMNTIRPTQTAWHDKATPFVHSDLRTCSHVFVRNDTVRPALTPPYQ GPYKVLRRSDKSFEVLINERATNISIDRLKPCYSLQQPEPVTQLTPPSAAEYTPPPPALPPPAS PPSAPPPPASPPPTEPSPPNDFSTGVTRSQRRVIIPVRYR GYPSY70_AG1p: MMQHSPERQPAPQAATHDAPPVNTERTGTSQATNAMTAAETASDPRVEAAQAVRLSVPEMDLHN LPAYFCALEHWFAATGITAKMDHKRYHVLMAQIPLRVYNEIQPIIENVPATERYNYIKRNILQH FGESQRSRLHRLLYGMDLGDRKPSQLLAEMHRASSDTLASTLLTDLWINKLPPHVQSAVVAAPG SVTEKAAVADTMVECLSASNNASVHHAVAGVRTTPNDFEQRISRQVDELTQQLNDFITECRNRD QRQSRPRPRPPVSSRVGTEPSEGECYYHRRYGTAARTCRQPCSFPAPVSQRVGQPSSSA
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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