Repbase Reports |
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| 2004, Volume 4, Issue 6 |
| June 30, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 155 |
GYPSY58-I_AG |
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GYPSY58-I_AG is an internal portion of retrotransposon GYPSY58_AG - a consensus sequence. |
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Submitted: 30-Jun-2004 |
Accepted: 30-Jun-2004 |
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Key Words: LTR retrotransposon; Gypsy clade; mag lineage; 5-bp TSD gag; AP protease; reverse transcriptase; RNase-H; integrase GYPSY58_AG; GYPSY58-LTR_AG; GYPSY58-I_AG |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Tubio,J.M.C., Costas,J.C. and Naveira,H.F. |
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Title: GYPSY58_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4:(6) p. 155 (2004) |
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Abstract: GYPSY58_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY58-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 425-aa GYPSY58_AG1p gag-like poliprotein (pos. 121-1395) and the 1084?aa GYPSY58_AG2p pol-like poliprotein (pos. 1296-4547). The sequence of the LTRs flanking GYPSY58-I_AG is deposited as GYPSY58-LTR_AG. GYPSY58_AG2p: RNRSPRRFLQPAEKRQQKGEVQEKKRTSVDMRTVTVNVCNVQQARKFVNIFINSNRVRLQLDTG SDITVIGRETWQQLGKPTLKPVTVHAKTASGSRLELDGEFEAQITIGDRTRSAVIRVMDSALHL LGADMIATFELGAVPMDQFCNKVEAEGVKWESRFPALFKGNGLCTKANVQIQLKPNHRSVFCPK RPVAYAMRATVDKELDRLEDLGVITPVDYSDWAAPIVVVRKQNGSVRICGDYSTGLNAALQSYE YPLPLPEDIFAKLAQCKYFSKIDLTDAFLQVQIKEEYRPLLTINTHRGLYHYNRLPPGIKIAPA AFQQLIDAMLSGLKCTSGYMDDVVVGGKTEREHDENLLNLFRRIKEYGFTIRAEKCSFKMPRIE YLGFVIDRQGLRPNPAKIDAILKMPAPTNVSEVRSFLGAVNYYGKFVPKMRELRYPLDALLKND TKFVWTRECANAFNRFKDLLASDLLLTHYDPNAEIVVSADASSVGLGATISHRYADGSLKVVQH ASRALTKAEANYSQIDREGLAIIFAVKKFHKMLFGRHFRLQTDHRPLLRIFGSHKGIPVYTANR LQRFALQLLMYDFTIEYVQTDKFGNADVLSRLIHEHAKPDPEYIIASAELENDVSSIASYCINI FPLNFRDVAKATESDPVLKKVYGYIMEGWPQNVAYAAELACFYHRSEALTTVRGCILFGERVVI PSKLQQRCLKQLHEGHPGIQRMKSKARSYVYWPSVDKDITEHVKGCHACAIAAKTSPREKPVPW PATQKPWERIHIDFAGPIDGDYFLIVVDAFTKWPEVIRTRSTTSAATIAILRSIFARFGYPETM VSDNGPQFVSAEFSEYCSSRGIQHVTTAPFHPQSNGQAERFVDTFKRSMRKIQEGGTTQDEALD VFLASYRSTPNAILPDMQSPAEAMLGRKMRTALELLKPPPAAQAEPANLDRRFQRGDLVYAKFY ARNSWKWVPAQIIRELGSVMFEVQTNNQRVHRRHVNQLRKRDSAVGASSEDVDIDHLPFDLLTD SAVAESSSVPLTDHQTSASPTQPSPRPIPFATTKRQQPIRSPRRSSRLRRLPRRLEGYRL GYPSY58_AG1p: MSTSENGASDFPMEGEQRRSSLLRSTGFATGQQIFPPANENVVPTVNLPSQNAAGQPSLQHFAA SSSVPAQSPDSAMLMQMMQLMQQQMQQQQQQVQQQMQQQQQLITQVLQQSQVTNQQSQAFPTQV IAPSNPELIIDALSGSITEFRYEAESEITFDTWFARYEDLFAQDASRLDDAAKVRLLVRKLGPA EHARYASFILPSVPREIPFDETVKKLKALFGRAETLVSKRYKCLQLTKSRTEDFVSFVCRVNRS CVNFQLSAMSEEQFKCLILVCGLKDDADADVRTRLLSRIEERTDVTLEQLSAECERISSLKVDS AMIATQAEEQILALRSRSNAQQQASKWKQRKQYQHTRNSDNVNKPPGPCWLCGEAHWASECSYA LHKCRDCNVTGHREGFCNQQKRGNKKGKYKKKNARRWTCVR
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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