Repbase Reports |
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| 2004, Volume 4, Issue 5 |
| May 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 135 |
NonLTR-1_CR |
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NonLTR-1_CR is a non-LTR retrotransposon - a consensus sequence. |
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Submitted: 31-May-2004 |
Accepted: 31-May-2004 |
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Key Words: Non-LTR retrotransposon; 5-15 bp TSDs; NonLTR-1_CR |
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Source: consensus |
Organism: Chlamydomonas reinhardtii |
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: NonLTR-1_CR, a family of non-LTR retrotransposons from Chlamydomonas reinhardtii |
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Journal: Repbase Reports 4:(5) p. 135 (2004) |
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Abstract: The genome harbors several hundred copies of NonLTR-1_CR1. They are over 85% identical to the consensus sequence. NonLTR-1_CR elements are characterized by a high rate of the premature termination of their reverse transcription. Above 14% of all NonLTR-1_CR elements are shorter than 35 bp. Only a few elements are as long as the consensus sequence. Most likely, the consensus sequence represents the 3' noncoding terminus of an autonomous NonLTR-1_CR elements. Because of the frequent 5' truncations, a coding portion is unknown. NonLTR-1_CR elements are characterized by 5-15 bp target site duplications.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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