Repbase Reports |
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| 2004, Volume 4, Issue 4 |
| April 30, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 102 |
Copia1-I_CR |
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Internal portion of the Copia1_CR retrotransposon. |
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Submitted: 30-Apr-2004 |
Accepted: 30-Apr-2004 |
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Key Words: LTR retrotransposon; copia superfamily; 5-bp TSDs; protease; endonuclease; reverse transcriptase; Copia1-LTR_CR; Copia1-I_CR |
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Source: consensus |
Organism: Chlamydomonas reinhardtii |
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Copia1_CR, a family of copia LTR retrotransposons present in the Chlamydomonas reinhardtii genome |
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Journal: Repbase Reports 4:(4) p. 102 (2004) |
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Abstract: Copia1-I_CR is an internal portion of the Copia1-CR LTR retrotransposon, whose LTR is deposited in Repbase as Copia1-LTR_CR. Copia1-I encodes a 1627 Copia1_CRp polyprotein (pos. 435-5315) composed of the C2HC zinc finger, protease, endonuclease, reverse transcriptase, RNase H. The PBS is complementary to an internal portion of tRNA Met. Copia1_CRp: MAGKLIKPSQVSELRAGDKDAFWDWVSNLKIVLKNNRMLDVVMPGIGVDGNGNFDAEDLKLDADARDFIE SKVDSTLRLALTNAGTAKAAYDTIYAKFNPATVARKAELSRQLNMLRMQRGESVAVYCARARKLAHELLE LEIIMKELTEGEDILAASESSETNLVMWVLTGLPESWENFKDRMMDSASSTGDLGVTMDQLQSKMENREQ RYQDGSGVGVSASAVAAIQVPPAPIYPAAQSQEDQVAVIAAALNRLGFQPRGAGHGGNNGGGDRPRKDML RVKCYRCKQFGHYADKCPQGQQQQGQLGLGGGAGGSGSGQVPPLVAALAQLQGLYAYMGGAPQKAAPMMQ QPAQTPQVAAMAAAAPAVAAPAAAAAAAATGVAPQQGGAERVRTYRMFMMMAQSQAQTLPHGPSDWLLDS GCSSPVSYDPSDLFDLRPLLEPTFVQVADGRPCAATHIGNMILRTSLGNAEADAMMKDVLLVPELGVKAL SISAMARAGVETTMGNAGAVCKSRDGEVVMRGRLCPRSGVYVISGRALQPSAEQWAQFQQXRGDPSPPPH QEDQAVGGAAGCWAVVDRSGELWRELQAARSRADMLAVDRIHRCFGHLGHTRMLQLPDVVSGLPVTRSQI QLWAATRGRCDACGLGKSARRRLSRQDQPRGATAPLQLVHTDVCGPLPAAACGSKYIVTVVDEYSKYSVL RFTRDRETVPYVLQSVLVLMETQCAPLRVKEIRSDRGGEYVGSVLADFCAAKGILQNFSAPYTPQLNGVA ERLNQSLQRAGRAMLVDSKLDVKYWRLAAEAANAVRLRSPVRGLAATPHQLFTGVKPDASHMHVFGSKVY VHTPEPQRDHKFSPTGRAGRFIGWEPDGNYRVLVDSKLVVSRDVVFDEDRAANAGEPATATAAASAPPLD LRVDSSDSDNDSPPAEAAGVSGGPPAGQSNEQGRRNTSQQGAREQREAAPSAQELHVERQPGSGEAAAEA STSAVASEPHARRRRRRKPLKPPAQGGAAAGEATAAGGAPNLAAATPPDKAERGGGVPATALPPQPRRSD RSRAAPVRLGFSAIVVVRGALVQVLAAAVKGPVGQDLPGGDEPTFEQAKQRPDWPLWQAAIQEELDSLRS LEVFQPAHPPAGAKALAVRWVLKVKRDANGKAARWKARLVVKGYQQRPGRDFGETFAPTGRLASLRFLLA IVAARNLELHQIDVKTAFLHGRVEEEIYADLPPGCDLGDSELKLLLRKSLYGLRQAPRAWYGKLKETLER MGFVESDADPGLFVLWAEQGILFVLVHVDDMLMAAELLPLMDSTKKALNGHFAITDLGEASFYLGMRIDR DRANRTIKLSQERYTLDLLEAHGMSESKPVDTPMTVGTPLMRADKGGGELLGLGEAQRYRGIVGSLLYLA NCTRPEISLAVGTLARFMAEPTEEHLKAAKRVLRYLKGTPGTGLVYGGHGLVLAGYAEPPSDAELSAESA VELKLAGYADADYAGCPNTRRSTTGYVFTLNGAAISWQSKLQPTVACSTVEAEYMAAGSATREALWLRKL GGDFGVLGSGPTVLLGDNQGAISLTRNPLHSAQTKHIDVMYHFVRERVAMGDLAVEYVPTSEMVADVLTK PLDAVKFKKFRGELGLK
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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