Repbase Reports |
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| 2004, Volume 4, Issue 3 |
| March 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 88 |
GYPSY48-I_AG |
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GYPSY48-I_AG is an internal portion of retrotransposon GYPSY48_AG - a consensus sequence. |
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Submitted: 31-Mar-2004 |
Accepted: 31-Mar-2004 |
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Key Words: LTR retrotransposon; Gypsy clade; CsRn1 lineage; 4-bp TSD gag; AP protease; Reverse Transcriptase; RNase-H; integrase GYPSY48_AG; GYPSY48-LTR_AG; GYPSY48-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Tubio,J.M.C., Costas,J.C. and Naveira,H.F. |
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Title: GYPSY48_AG, a member of the CsRn1 lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4:(3) p. 88 (2004) |
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Abstract: GYPSY48_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its Reverse Transcriptase, RNase and Integrase is phylogenetically grouped with representatives of the CsRn1 lineage of other organisms. GYPSY49_AG, GYPSY50_AG, GYPSY51_AG, GYPSY52_AG and GYPSY53_AG are other members of this same lineage in Anopheles gambiae. The GYPSY48-I_AG consensus was reconstructed after multiple alignment of 5 copies. The consensus encodes the 297-aa GYPSY48_AG1p gag-like poliprotein (pos. 1402-2292) and the 1068?aa GYPSY48_AG2p pol-like poliprotein (pos. 2145-5348). The sequence of the LTRs flanking GYPSY48-I_AG is deposited as GYPSY48-LTR_AG. GYPSY48_AG1p: MSKNESDDKNAGPSAIPVRAAGPSSVAGTMEQENSHLAIEKISTKLPCFWEDAPSAWFVA AEAEFDISNVTRERSKYSHVLSVLPKNVLPKIMDIITMPLPNNPYSHLKSQLLERLNASE EQRITQLLYHVQMGDRSPSDFYRHMVQLAGDSANLTSELIRKLWLSRLPKTMEVALIAIG NREINELIKIADRVWEATQAGAVSSIAGVSSSESSGRNPSNETAILRQEISELRSMLRRI SFQTGNNRGRQRERSQSQKRARTPSQVRKHPMCYFHFRFGEQARRCQKPCNFSQQKN GYPSY48_AG2p: RKTARKISEPKTCKNTITGSEAPHVLFSFSVWRTSTTVPKTLQFFAAKKLICSTAAAGNP RAILGSSRLFIDDEKTTFTFLVDTGADVSVIPYNLFGKVIKQAEHQLVAANGSPIATYGT KLLQLSLGLRRVFSHCFTLAEVNRPIIGADFLAKHDLWVDLKRKRLIDHLTGQETIATIA LVDTPTPKNWMIESSIFGEIFKKYPTLVDPPDYKKPVRHSIVHNIETKGSLPFSKPRRLD PKKHKIAQAEFQHMLDLGICRVSSSSASSPLHMVPKPDSDWRPCGDYRRLNAITIPDRYP IPHVQDFTMNLDGCKFFSKLDIIRAYHIIPVAEEDIHKTAITTPFGLFEFLRMPFGLRNA SQCFQRLMNNIFHDLDFVFVYIDDILIASSTRESHLEHLHIVLKRLTDHDIKLKPSKCIL GVNQIEFLSHTISAKGITPSPEKIMAIRDFPSPCSVKQLQRVLGMVNYYHRFIPNVSDKL RVLHQLVKEHNKNRKIKFEWSDACEQALNQIKDELSNATMLVHPKSNATYTLTTDASSVA VGAVLQQTSEGILEPLAFFSKTMTPTEQRYSTFDRELLAITLGIKHFRHFLEGRSFTVYT DHKPLIHALNSKTEKSPRQCRQLDFISQFTTDIKYITGESNVVADALSRIGETNEITNFT YEAIAKEQQKDEQLKQLFEDSNSQANSKFKLNQLILDKNKLVFESSTGQNRLYVPQSLRK KTFANLHNLSHPGIRASRKLLSERFFWPSMNKDVGNWTRSCVGCQKSKIGRHTRSPLEAL SVPKGRFEHVHMDIVGPLPPSEGMSYLLTIVDRFTRWPECYPMPDMSAKTLAETFVRNYI PRFGCPSTITTDRGRQFQSKLFEELTKLLGTHHIKTTAYHPQSNGMVERFHRHLKGALKA CEDNTHWISRLPLILLGIRVAYRDALKGAPAEMVYGESLRLPSEVFLPSAAKSVEDVPEF VQDFKKALRHIDPCPPKLNDTTPVYLPKHLQTCKHVFVRVDKVRTGLQAPYEGPFEVVRR CRKFFTVKIKEKNESISIDRLKPAFEMEGVSKTGKTTNSQKNVRFAKN
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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