Repbase Reports |
|---|
| 2004, Volume 4, Issue 12 |
| December 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 313 |
Gypsy10-I_DR |
|||
|---|---|---|---|
An internal portions of the Gypsy10_DR LTR retrotransposon - a consensus sequence. |
|||
|
Submitted: 00-Dec-2004 |
Accepted: 31-Dec-2004 |
||
|
Key Words: LTR retrotransposon; endogenous retrovirus; Gypsy superfamily; gag; reverse transcriptase; integrase; Gypsy10_DR; Gypsy10-LTR_DR; Gypsy10-I_DR |
|||
|
Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: Gypsy10_DR, an LTR retrotransposon from zebrafish |
|||
|
Journal: Repbase Reports 4:(12) p.313 (2004) |
|||
Abstract: Gypsy10-I_DR is an internal portion of the Gypsy10_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy10-LTR_DR. Gypsy10_DR is characterized by 4-bp target site duplications. The internal portion encodes one 1988-aa polyprotein composed of gag, protease, reverse transcriptase, and integrase domains (pos. 142-6105). Gypsy10-I_DR1p: MSFRSDPQLQSELLEWCREAVIDPAHALLLTGVPQNTETACIEKVAESVKLFGRVRVRDSKGGA TPTTLLVLCECREVVDPTNCPEELHPTDGEEAWMIILATERESAHVAPAEFADKLSKFLKDEGK SMTDVHALFSPQSANPSSPESIIRAVGEILEKTVRPSSDGSAYRRLRTFSGIVPTPVGEETMDH WIEQAKLMISECECSEKEKRRRIVESLKGPALEIIKAVRMSCPDAEAVKYVEALESTFGSSESG EDLYFAFRLLRQCPGESLSAFLRRMEKSLTKVIQKGGLTSANADKARVEQLIRGAVESDMMLLQ LRLRERKENPPTFLSLLNEVREAEEIEATRRKITATAKPIHLQEESICPTVVHELKAEIQELRA QIKSDRSNIASSMMIENRVKSRQLSPTDSKEVVKETEVQVLKKQVQQLQQQLAIMSVGQSNSTS HAQLPQTPVSSSSRHQLSKPKADYFCYRCGEEGHIATKCKAPENATLVINKLVRSLKRAKGTKS DPNSHAEDRACFSKKSQIHSCESKGLPKGLVGPASTIAVKVGGHPCCALWDSGSQVTIVFDSWY SEHLSNVPILPLSGLSIWGLSSSNYPYKGYIVVDVTFPVALTGAEETVTILALVCPDPKGPQQF PLIIGTNASFFQRMTNGEGTNITRSAHSLRIQTHLDTTSFAVDQPEGQVRWKGPGMLNVPSQGE RYASCKIESDKPLRKDIFLIETSPVDSLPAGLLVSPVVFSSSAVDVNNFRILIQNETSKELSVP PGTVVAQIFPTDTVTVAHGVTESNDQINPDVFNFGDSNIPTAWEKRLRLKLAERKNVFSTQEWD VGLAKGVTHQIRLHDPHPFRERSRRIAPADIDDVRRHLKDLLAAGIIEESRSPYASPIVIVRKK SGAVRMCIDYRTLNSRTTPDQYVTPRIDDALDCLAGSKWFSVLDLRSGYYQIAMSEEDKEKTAF ICPLGFYQFQRMPQGITGAPATFQRLMEKVVGDMHLLQVIVYLDDLIVFGSTLEEHEERLMKVL DRLEEWGLKVSIDKCQFCQPKVKYVGHIVSAAGIAPDPEKVAAVTQWKEPTDLKSLRSFLGFCG FYRRFVKNYSSIVRPLTELTKGYPPAKGKSKVEGKKYFKETDQFGERWDNACKQAFQEIIKCLT QAPVLAFADPSLPYVLHIDASLSGIGAVLNQEHSDGLRPVAFASRKLSASEQRYHIHQLEFLAL KWAVVDKFHDYLYGVPFVVRTDNNPLTYVLTSAKLNATGHRWLAALATYNFSLQYKPGKHNIDA DVLSRYPAEPATSFSWTEIPQSGVKAICQLSNLSWSDEKSRLIDQLGVSPGSIPAVYSCPALLD VCHLEQLTHADLKLSQEQDPVIGKVKQDIARNKPLTPIKGSDPTLTLLQRQGPKLVIRNNLLYR VTKNQSGKEKVQLVLPEKYHLTVLRSLHDDSGHLGVEKTTELLRDRFYWPRMTSDIEQYIKNCG RCITRKTLPQKSAPLSHITSSGPLDLVCIDFLSLEPDSKGIANVLVITDHFTRYAQAFPTKDQR AVTVAKVLVEKFFVHYGLPSRIHSDQGRDFESRLIQELLGMLGIRKSRTTPYHPQGDPQPERFN RTLLSMLGTLEPAQKSKWSQHITQLVHAYNCTKNEATGYSPYQLLFGREARLPIDICFGISPAG EKGVTHLQYVEKMKAELQQAYQLAAETSLKAHQRNKKLYDTRVKPQLLTVGDRVLIRNLAVKGK NKLQDRWNSLPYVVVEKFKDLPVYKLRPERGMGAIRTMHRDHLLPVGENVRFSKPNDSNPSTQS PVTRAQSGKRVQKEKKVENVEQVRDENHETSESEDDNLCYYYPKLIPALRTLPTPQIAVEPEIP AEYGPELNSECEARKDTVEEEAREVLNQPAEAVDDQGVGDNDHRNVPKPGSEPAVCRKSTREVK PVIKLSYDDLGRPTDKPLTMVHRGMVVHIEDLSKTRKSCNTVWCHPMAQCSQCVPTAPGPIVRT VIQF
|
|||
|
Derived: [1] (consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||