Repbase Reports |
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| 2004, Volume 4, Issue 11 |
| November 30, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 305 |
hAT-2_DR |
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hAT-2_DR is an autonomous DNA transposon - a consensus sequence. |
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Submitted: 00-Nov-2004 |
Accepted: 30-Nov-2004 |
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Key Words: DNA transposon; hAT superfamily; transposase; hAT-2_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: hAT-2_DR autonomous DNA transposon from zebrafish |
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Journal: Repbase Reports 4:(11) p.305 (2004) |
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Abstract: hAT-2_DR is an autonomous DNA transposon. This transposon is characterized by the 8-bp target site duplications and 16-bp terminal inverted repeats. The consensus encodes the 611-aa hAT transposase (pos. 255-2087). The genome contains about 1000 copies of hAT-2_DR nonautonomous elements that are ~97% identical to the consensus. Nearly all these copies are nonautonomous elements. The transposase-encoding elements are present just in 2 copies. hAT-2_DRp: MPANTMDRFLRPPDSKPSSSGLKPKRRRYDDQYLSLGFTWTGPADEPRPLCVVCQDILANDSMR PAKLRRHLETKHDEVAGKPPEFFKRKLQTLQGQKKIVEDFVKLNGKATEASYRVALRIAKAGKA HTTGETLILPAAKDICSVMLGEAAASKIDSVPLSDNTISRRISDMAQDVKEQVLDGVRHSPFYA LQIDESTDVASCAQLLTYVRYVKNMDIHEEFLFSSPLPAHTTGEQIFNQLNEFVRKNDVEWERC CGICSDGAKSMTGRYSGLMSRVKEVAPNAIWTHCTIHRQALAAKKMPNDLRSVLDEAVKIINLI KARPLNARLFHILCDELGAHYKQLLLHTEVRWLSRGRVLSRLLDLREEVLLFLSNVQSTLVQHM SDLSWIARLAYLSDIFERLNALNLSLQGRDCNVFSAFEQVSSFRRKLDLWATRVEKGCLDMFPT LADFMQEAGSVVHIQPLVAEHLRGLCQQFTHYFSNETILDEWIRNPFKFKPAESDVLSIQDEEA LIDLTSNHELQQMITHSSIEHFWLSVQNEFPELTQKALRKLLPFVSTYLCEPEFSALTFIKNKY RSRLQVEDDLRLFLTSLQPRISLLCAARKQLHTTH
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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