Repbase Reports |
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| 2004, Volume 4, Issue 11 |
| November 30, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 287 |
COPIA-I_MT |
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Medicago truncatula copia-like retrotransposon COPIA_MT, internal sequence - a consensus. |
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Submitted: 00-Oct-2004 |
Accepted: 30-Nov-2004 |
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Key Words: copia-like retrotransposon; gag-pol domain; COPIA-I_MT |
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Source: Medicago truncatula |
Organism: Medicago truncatula |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago |
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| [1] |
Authors: Gentles,A. and Jurka,J. |
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Title: Copia-like retrotransposon COPIA_MT |
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Journal: Repbase Reports 4:(11) p.287 (2004) |
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Abstract: COPIA_MT is a copia-like retrotransposon with ~1240 bp LTRs, and a 5 bp target-site duplication. Average similarity to consensus is 94%. It is most similar to copia-like retrotransposons TORT1 (Lycopersicon esculentum) and PREM2_ZM (Zea mays). Genscan_predicted_2378aa: MSGDEESVTTKYTSVKHDYDTADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILE DGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLC ANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILR SLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKA YKASESEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKP GHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAVG LVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQ KSTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEKCDKGSGNKHEIALDDFIMAGIDRSKV ASMIYSTYKNKGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFVPEGTNAVTAVQSKPEASGSQA KITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLIKPESKIPKQKDQKNKAATASEKTIPK GVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQ TGKIIGTGTIGNSSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKG KRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSD ALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVK FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQ NGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNI SYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREP GSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEAESNSEAEPSPKVQNESA SEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALS DDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQ EGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHP DHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFG STNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVM NTPMHPTCTLSKEDTGTVVDQKLYRGRTMSIEEWELIIQAENPVDFASLTHHGCDLVRFYKKQK LMSYFSLLNGPTYEVLVRQFWVRASVFDIEAAKQEEAQLILVDPTLKGKTREEMGLLSFTGTEI RSNVMGIPVTXNEQVIAQAMRRDASGKYFGEEIPNPRTSXWKEIVNETIYGSKDAKPYSTLSME KKMLLKIQNENIFPKGGGSDQPSLGHKVFLHHTITQETTMNVPKYMFKYMIKELKKSQMENRKF VPYGRLLSVIFQEGGLLSALKDVGIYDNQKLGAVTGKIINAATLVKMKLIPANARKKLDTDMHE SDAISDLVTHHIPICKKDPLDVQRAYILDFYKTYNKKISLKDVPEEMYGGDLPVAKGRKSKKKQ ITKEEYLAEDATEEGAQKHKKAKKEKSAMSTILEEVEDLDDVPLIRKRTRSAQETAEQPASEQT GSEQAASEKPPSPKKKREAALQTIKRKRSXRNLKTAEGRRAEMLEELEENWDEDSSPKKAKRTI TSEPIVMPSFEMTEELKQYAREYSASKIAEKKRMKELYEKERDERLKAAGYVPTPDIAALASEL EQETVQYGATLLSQALKNKQASGATSSEPASKAPEAVHPEAXSSGNPSKAPTNTQIPSLPSSPS SSSTESDDQPLSQHIDKLLKTKPTKLTEFGTLDYERTQIEFSKNRIKLCEKFNLPTTHPLYPDI PEPVSVQQPEPNQTNPPNNQTPQKASEVVSEATTSETPQQQESSTLHXLEKHLGGEMQPTPTKA SKTVPGKTVLENQQTQTIPEQTVPEQTASEQVAPDQTTSEQIASDQTTEPEQQPEPPIIDLTSD QPSTSNTTQTEPSPIPDHILESEYIEEQLIRLSDEIQALILRRTVPVPPIHYYDQWMDLKKSFD ELLDQLRTKX
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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