Repbase Reports |
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| 2004, Volume 4, Issue 10 |
| October 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 261 |
Gypsy6-I_DR |
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Gypsy6-I_DR is an internal portion of the Gypsy6_DR LTR retrotransposon. |
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Submitted: 00-Oct-2004 |
Accepted: 31-Oct-2004 |
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Key Words: LTR retrotransposon; endogenous retrovirus; gag; pol; Gypsy superfamily; Gypsy6_DR; Gypsy6-LTR_DR; Gypsy6-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Kapitonov,V.V. |
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Title: Gypsy6_DR LTR retrotransposons from zebrafish |
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Journal: Repbase Reports 4:(10) p.261 (2004) |
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Abstract: Gypsy6-I_DR is an internal portion of the Gypsy6_DR LTR retrotransposon, whose LTR is deposited in Repbase as Gypsy6-LTR_DR. This retrotransposon belongs to the Gypsy superfamily. Some copies of Gypsy6_DR are flanked by identical LTRs. The internal portion encodes the 354-aa Gypsy6_DR1p gag (pos. 160-1221) and the Gypsy6_DR2p 1418-aa pol (pos. 1092-5345) polyproteins. The polyprotein is composed of the protease, reverse transcriptase and integrase domains. Gypsy6_DR1p: MEDELRELRELVTQLKADNERLRQEQVPAALPGPSNISIPVVSDPPLIDAGPSSTDRFVFVPRD RKCPKFSGRSGIDINEWVEEAEACMRLRHLSSADRAFFLFDHLEGEAREEIRYRPQSEREDPKR VIQVLRDLYGCTKSYVALQESFFSRRQQEGETLEFSLALMSLLEMVKGQSPHGMPNAEILLRDQ FVENVNDCTLRRELKQFVRRQPTATLVDVRGEALRWEREGMPGGARGRSQSVPSVYGIQYGVQG NRSVSSGAKSEMTELRDMLLKQQQQLNQLVQSMSLLQSCSPSLPPPKVNPVICRRCRQPGHFAR NCDGGRMSVRAPSAQITSALTRREQSSSSQPSEN Gypsy6_DR2p: MSSARPFCEKLRWWADVGPCTISPNNFCFNKTRTVILQPAVGKLVPTKLQGHNLVGKRVGSNDH MPCLMSTCPKLVVTIGGVQVPCLVDTGSMVSTITESCFMTNFGLWGQEQLRSCHWLQLRAANGL SIPYIGYLELDIELCGRVVSGCGVLVVKDPPGGMCAQTPGVLGMNVLSRCYQELFGQHGTGLFD LPAVSQAPSFIFQALQNCHQAGVQPVKDAEGQVRVRGRRACRIPGGTVKFVATTCSVQYSGNAV LFEPPISGLPAGLLASPALLKVDGGTVYVPIVNVGTMDVVLYARTIVGVVSKVDVVALPPEVAE VNMVAARVSAQSSPSVQEQIATLDLSKLPEVEQGKVRALLLKYLPVFSSYDGDLGCTNLISHDI PLLDEIPVRQRFRRIPPSEYEVVKAHINQLLETQVIRESSSPYASPIVLVKKKDGGLRMCVDYR RLNAKTRKDAFPLPRIEETLDSLAGACWFSTMDLASGYNQVPVTEKDKPKTAFCTPFGLFEWNR MAFGLCNAPSTFQRLMERLFGDQQCQSLLLYLDDIIVFSSSIDEHLARMEVVLSRLQREGLKAK LSKCAFFQREVRYLGHVISSEGVSTDPGKVEAVANWPCPTSVTELRSFLGFASYYRRFVEGFSK LAAPLHRLVAQLANPKQRKGNAHDFAASWSTECQSSFEGLKIKLTSAPVLAYADFSLPFILEID ASQGGLGAVLSQEQQGKVRPIAYGSRSLRPTERNPSNYSSMKLEFLALKWSMTEKFREYLLGQK CIVFTDNNPLSYLNSAKLGVMEHRWAAHLSAFDFEIKYRSGRSNRNADTLSRQNFSSTGEVQGL CPGVAVPAVLQQVAPDGLVTQVNQVTAFPCPSGSDMGALQEADTVIGEVLVFWRRKLLPTSEER KQLSRLAVILLRQWGRLVEIEGVLYRRVSRPDGGEEVLQVLLLAVMKTEVLTQLHQQHGHQGVE RTSQLVRQRCYWPGMFADIARWCQECERCQCAKGTPSAPSSFMGHLLASRPNEILALDFTLMEP SRSGLENVLVMTDIFTKYTLAIPTRDQRAETVAQVLVAEWFCKFGVPGRIHSDQGRNFESTLIQ QLCGLYGVVKSRTTPYHPAGNGQCERFNRTLHDLLRSLPPSKKSDWPLCLPQVLFAYNTTPHQS TGESPYYLMFGQEPKLPIDFLLGRVKEPSAGSVHGWIVEQQDRLQVAFEGARERLGAAADRRKA RHDLQVREAPLKEGQLVYLRDHSVRGRCKIQDLWSSVVYQVLKAPTESGVVYTIAPVADLSKTK HVHRSLLKAQLGPNLLPSPPEPAMGDGMQPSDEECDGDLLVLVPETPELRGRSRSQGSVPPVPR VVDEELEGRATGETVQPEVVPSNPVRAAEVVVRRTVRSTAGQHSNLHHLPRAVGTGTVSSIATN PFGTFFRPWD
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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