Repbase Reports |
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| 2004, Volume 4, Issue 1 |
| January 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 21 |
GYPSY28-I_AG |
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GYPSY28-I_AG is an internal portion of retrotransposon GYPSY28_AG - a consensus sequence. |
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Submitted: 31-Jan-2004 |
Accepted: 31-Jan-2004 |
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Key Words: LTR retrotransposon; Gypsy clade; mag lineage; 5-bp TSD; gag; AP protease; reverse transcriptase; RNase-H; integrase; GYPSY28_AG; GYPSY28-LTR_AG; GYPSY28-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Tubio,J.M.C., Costas,J.C. and Naveira,H.F. |
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Title: GYPSY28_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4:(1) p. 21 (2004) |
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Abstract: GYPSY28_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its reverse transcriptase, is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG and GYPSY27_AG are other members of this same lineage in Anopheles gambiae. The GYPSY28-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 1387-aa GYPSY28_AGp gag-pol like protein (pos. 16-4176). The sequence of the LTRs flanking GYPSY28-I is deposited as GYPSY28-LTR_AG. GYPSY28_AGp: MVDQASNAGNVPSTSSSIIPNAAAAAGTVPPPNFAMEPFDKRKSKWMRWVDRLETAFDIYRVTEERDKKNYLLHYMGTET YDVICDKVAPAAPRDCTFQQIVDTLKDYFSPQPLEIAENYKFNSRRQGDKDAVTADESVDEYLVALRRLAASCNFGDYLE KALRNQLVFGIKRGDIRDRLLEKRTLTLQEARDIAVSMELSRKGRTEIEGCSAKQEMHAVYQSKGKGWKPNKGVDKPSTS TEKSNCYRCGDKSHLANACKYKNIICSFCKTKGHLAKVCFKKKKNEAHSTGSAAAQTNYVEQQGNDATIESTNIRDVCTV GSSTHCKKLWLNMKVNKKTIKFEIDTGSPVTIISEEDQKRLFPDAQLRACTTNLVSYCNTPIDVCGILDVDVQLARHTLK LPLYVAKTTKHPLVGREWLSEIPLDWNKVVADSKSVNKIESDSMCSVADCNALLERYPRVFEASIGRISNVQANLRLKEN ARPVFIKARKLPFNMIKVVENELDKLVQEGVLVKVDSSDWATPIVPIKKSQNRVRICGDYKQTVNPNLVVDRHPLPSVDE LFASLAGGKKFSKIDLVQAYLQLEVAPADREILTLSTHRGLYRPNRLMYGIASAPAIWQRQIESILQGIEGVSVFLDDIK ITGETDEIHLFRLEEVLRRLNEREIRVNKEKCEFFVDQIEYCGYVIDAKGIHKIQKKVDAIQEMPKPRNKDEVRSFVGLV NYYGRFLQNLSTILYPLNNLLKTDVPFQWNKQCEDSFKKVKEQMQSDNCLVHYSTELPLLLATDASPYGVGAVLSHIYPD GSERPIQFASQTLNRVQQKYMQVDKEAYAIVFGVRKFFQYLYGRTFTLLTDNQAISKIFGEHKGLPVMSALRMQHYATYL QSFDYKIRFRKSTDHANADAMSRIPLHITDPDNEIEESDSIELSQIETLPLTAVELEQAVAKDQQVQKLIQGIKHGRVVE AKDRFGVDQQEFAIQKGCLLRGIRVYVPEILRRKVLDELHSAHFGITRTKSLARGYCWWPGMDQDIERMVANCTECQLIR AEPAKMKLHCWETPSAPFQRVHVDFAGPYKDLYFFIFVDAYSKWPMVKVCKSITAEQTVNMCRELFSTFGIPSVLVSDHG VQFTSTLFQQFLKMNGVVHKMGAPYHPATNGQAERYVQTIKNKLKALKCSTSKINLELCNILLTYRKTVHPATGKSPSML VFGRQIRSRLDLLIPTQESSRKAEIPVRSFQIGARVRVRDFLSHDKWKFGKISARVGKLRYEVKLDDGRVWERHIDHIAE VGADLRGTSAVNQESDLREQGDTTYFEEVLPSTSNANTAVTTSDSEITVENTPGSSDRDADRPVERNNDPGMERDLTPAP VRPINLEEESVLRRSTRARKPPQRLNL
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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