Repbase Reports |
|---|
| 2004, Volume 4, Issue 1 |
| January 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 5 |
GYPSY20-I_AG |
|||
|---|---|---|---|
GYPSY20-I_AG is an internal portion of retrotransposon GYPSY20_AG - a consensus sequence. |
|||
|
Submitted: 31-Jan-2004 |
Accepted: 31-Jan-2004 |
||
|
Key Words: LTR retrotransposon; Gypsy clade; mag lineage; 5-bp TSD; gag; AP protease; reverse transcriptase; RNase-H; integrase; GYPSY20_AG; GYPSY20-LTR_AG; GYPSY20-I_AG |
|||
|
Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Tubio,J.M.C., Costas,J.C. and Naveira,H.F. |
||
|
Title: GYPSY20_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
|||
|
Journal: Repbase Reports 4:(1) p. 5 (2004) |
|||
Abstract: GYPSY20_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its reverse transcriptase, is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY18_AG, GYPSY19_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other members of this same lineage in Anopheles gambiae. The GYPSY20-I_AG consensus was reconstructed after multiple alignment of 3 copies. The consensus encodes the 1378-aa GYPSY20_AGp gag-pol like protein (pos. 110-4243). The sequence of the LTRs flanking GYPSY20-I is deposited as GYPSY20-LTR_AG. GYPSY20_AGp: MALPNPVVDDPAVASPALPAVSGAAVPVTFHFEPFNPASSKFDRWLNRLQISFRIYHVREADKRDFLLHYMGGPTYDVLC NKLKNAEPHTKTYDEIVALLKEHYSPTPLEILENFKFASRKQLEQETLSDYLMHLEKLAQTCNFGDYMDKALRNQFVFGI QNRVIQSRLLEVRDLTLTKAKEIAFGMEMSHRGTDEMHNSRQKSEVQHIEHGANKTKKSFQSSSQASSSQSSGRLSNKQN GGNKRCYRCGDPDHYADKCKHKATICKYCKKAGHLERMCLTKTNEKGTDDAHHLEEQPCVMKDVLHLNAIQGIAGKFLLS LWINQKQLTFEVDTGSPVSLINLQDKRKYFNNFDISPTNIRLVSYCDNDIGVLGKITVKVVANGEEFTLPLHVAESSRHP LLGRDWLLALNLDFNRVFQPGTHSVSYCSGKNQSTTNALNNLLTKFSRVFDERVGKIEGIQATLTVRKNTKPVYIKARPV AFAVRSTVDKEIDHFVKEGIWEKVDHSEWATPVVAVRKAGGKVRLCGDYKITLNPNLLVDEHPLPTVEELFATVAGGETF SKLDLSQAYLQLEVRPEDRDLLTLSTHRGLFRPTRLMYGVASAPAIFQRLMEEILQGIPGVTVFIDDIRVTGSDTKMHLL RLEEVLNRLDKYGLRVNREKCDFFSDRIEYCGYMVDKQGIHKLREKIDAIQNMPIPKNKEQVRSFVGLINYYGRFFPNLS TILYPLNNLLKDDVPFVWSADCDKSFTLVKREMQSDRFLVHYDPSLPVILATDASPYGVGAVLSHQYLDGTERPLQYASQ TLTRTQQKYSQIDKEAYSIIFGVRKFHQYLYGRKFILVTDNKPISQIFSESKGLPTMSAMRMQHYAAFLQAFDYKIRHRR SSEHFNADAMSRLPVSTTDPESEIEEPEVVEVNAIQTLPLTVDELSAATLADVNVRELLRALRTGNSVEGKHRFGVNQEE FNLHKDCLMRGSRVYIPPALRRKVLEELHSTHFGITRIKSLARSYCWWEGIDRDIENLVNDCASCQAAKANPPKVTFHCW ETPTEPFQRVHADYAGPFMGLYYLILIDAYSKWPMVYVVKNMTTETTIRLCREFFSTYGLPSVFVSDNGPQFTSTEFSRF LKLNGITHKLSAPYHPATNGQAERFIQTMKSKLKSLQCDRGEVHSEICNILLSYRKMIHPATGFSPSKLVFGRQIRSRLD LMIPSNDPNSNEVQSKIRALTTGSKVAAREYVHGNKWEFGTIKERLGKLHYLVKLNDGRTWKRHIDQLRSVGAGLSESTK EEISLRREEIGGENFYDNTIAVTPDITTNTYNYDNTYTSTDMSLPAIPTAPNLETGIQLPISNETAAIDQPTGSADLPVD QRLRRSLRTIKPPQRLNL
|
|||
|
Derived: [1] (consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||