Repbase Reports |
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| 2004, Volume 4, Issue 1 |
| January 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1 |
GYPSY18-I_AG |
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GYPSY18-I_AG is an internal portion of retrotransposon GYPSY18_AG - a consensus sequence. |
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Submitted: 31-Jan-2004 |
Accepted: 31-Jan-2004 |
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Key Words: LTR retrotransposon; Gypsy clade; mag lineage; 5-bp TSD; gag; AP protease; reverse transcriptase; RNase-H; integrase; GYPSY18_AG; GYPSY18-LTR_AG; GYPSY18-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Tubio,J.M.C., Costas,J.C. and Naveira,H.F. |
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Title: GYPSY18_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4:(1) p. 1 (2004) |
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Abstract: GYPSY18_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its reverse transcriptase, is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other members of this same lineage in Anopheles gambiae. The GYPSY18-I_AG consensus was reconstructed after multiple alignment of 5 copies. The consensus encodes the 1410-aa GYPSY18_AGp gag-pol like protein (pos. 80-4309). The sequence of the LTRs flanking GYPSY18-I is deposited as GYPSY18-LTR_AG. GYPSY18_AGp: MNNENLETVINQMAQLLQQMAAFKTRSPDEILESLSKTIEEFRFDEENNITFEKWYVRFKDLFQNDASSLNDEAKVRLLL RKLETSAHSRYVNYILPKQPHENSFEETVNILKKIFGKQYSVFHKRYQCLQIVKSALEDIITYGGRVNKACEDSEFENLK LDDFKCLIFICGLQAPEFSDIRARLLSRIENATPEAKVNIQTLMAEFQRLINLKADTTMIENQSRSKHSVHAVSEKKPYR LPQPSRFDNSKDQRQPKSDSNTVPRTPCWQCGKMHFVRDCNFTDHLCKVCKNVGHKEGYCKAMRSKSSNNNTYQKSEKNQ NQNQKKSQGIFVNHVTKNTAKRKFISIIINGITTSLQLDTASDITVISKTTWQHLGQPKLSQASIEASNASGEQLKLIGE FECEVILNAITEKCVCFVTSSPVLNVIGIDWIDRFNLWAIPFDVLCKKVSSACPKDRIVQLQSKYPTVFDDSLGHCTKTK VKLFLKPNVKPVFCPKRPVPFNTIALVDAELSRLQSLGIITPIDFSEWAAPIVAIRKPNGKVRICADYSTGLNEALESNH YPLPTPEEIFAQLNGSVVFSIVDLSDAYLQVEVEDESKHLLTINTHRGLFQFNRLAPGVKSAPGAFQRLVDGMIADIPGV RTFLDDAIIFGKTWEAHKQSLDTFLQRLKEYGFHVKLEKCHFYQTEIVYLGHVVDRNGIRPDPEKLKTIASIPAPTNISE LRSFLGAVNFYGRFVRNMHELRHPLDQLLKKDTKWKWNSDCQTSFEKFKKVLQSDLLLTHYDPNLPIIVAADASSTGVGA VIFHKFPNGYLKAIQHASRTLTSAEQGYGQPEKEALALTYGVTKFHKYLLGRKFTLLTDHKPLLSIFGSKKGIPLHTANR LQRWALMLLNYDFTIEYVSTTEFGCADMLSRLIDRCKQPEEDYVIASISLEEDIQNVMHESLKQVPVSFADIQKATRLDE TLQAVLKFIREGWPNEASSIKNQDIRSYYTRKESLTHVDGCILFHNRVVVPNIYRKKVLQQFHRGHPGMVRMKSISRSFV FWPGMDVDIENFVRRCTSCCTAGKAPIKETPESWPVPEKPWSRVHVDYAGPVDGVYFLVVVDPYTKWPEVYATKTTTAKT TIKFLTQSFATFGVPETIVSDNGTQFTSFEFQAFCKQLGICHIRTAPYHPQSNGLAERFVDTLKRTLRKIRAGGETLDEA LQTFLQVYRTTPTPDKSPAELMFQRPIRTVQSLLLPPVSRSRNEKPEAGRKFFDPGEAVYAQVHRNNSWEWKPASIVERV GRVNYNVFLEDNQRIIRSHANQLKKRLQEETSCGNRNCHDTGNLLTIFFDEFELGTPQAVENSIEMTEQEHYYSADEESA EEIEGENWQTSSSTVTTQATPPMPASSAQPVKAERPRRIRRPPARFEPYW
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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