Repbase Reports |
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| 2003, Volume 3, Issue 9 |
| September 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 180 |
HARBINGER2_DR |
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Autonomous Harbinger-like DNA transposon. |
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Submitted: 30-Sep-2003 |
Accepted: 30-Sep-2003 |
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Key Words: DNA transposon; Harbinger superfamily; transposase; DNA-binding protein; TDR; HARBINGER2N_DR; HARBINGER2_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: HARBINGER2_DR, an autonomous Harbinger-like DNA transposon from zebrafish. |
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Journal: Repbase Reports 3:(9) p. 180 (2003) |
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Abstract: HARBINGER2_DR is an autonomous Harbinger-like DNA transposon. It is characterized by 13-bp TIRs and the CAG target site duplication. The zebrafish genome harbors ~100 HARBINGER2N_DR nonautonomous elements derived from HARBINGER2_DR. The HARBINGER2N_DR consensus sequence is nearly identical to HARBINGER2_DR (only 4 indels, it matches positions 1-603 and 3311-3727). HARBINGER2_DR encodes two proteins, the 276-aa HARBINGER2_DR-1p (2 exons, positions 642-1437 and 1558-1592) and the 368-aa HARBINGER2_DR-2p transposase (positions 2140-3246). HARBINGER2_DR-1p is similar to Myb-like proteins present in different eukaryotes. HARBNGER2_DR-1p: MAETKKQRKVIFQKEEINIILEEVELQKHIIFSRFKGSHTNKEKQKMWDDIATKLTATRG IKRSGNEVRKKWQDFSSLAKRKRALQRTTINKTGGGPNDAPILTAEEEKALSILGTTASD GICGGIDLHGGEGLRQPEPESGPPCSQEQSGSPPIDRQLPSPSPPNSPTDQPPSSIVQAT ATTPRFENICGCSQDLVQLEREKLDVLKDIRQSLKEANEMNYNFQREIIELKKAKMALEE RRLSLEEMSFARPSISVPIILPDESDPGEQTTNLNQ HARBNGER2_DR-2p: MAALQRVFQLRVRQRERQRQRQRRPRSTLCTINAFIRQHQNPLDMLDDMAVIHRYRLPRG EIVQLLNVIGPQLMRATRRNFALSPDVQLLAAVRYYATGSFLQVLGDGLGLSKPSVSRAV QAVTYALLPLAAEHIKFPASRQAMSDIQEYFLTHYHIPQVIGVIDGTLIPISTPSVDGHT YICRKGYPAINCQVICDHNCLITDIVARWPGSTHDSYIFTNSSVGQEAQNSNGHWRLLGD SGYPLRPYLFTPVANPVSNSEAHFNEAHRVARSTVERTLGRWKLRFRAIHKSSGGLLFVP QKCCAVITVTAMLHNIAVRARVPLDIREEDEEVEEENEVEMRIHDDQPRHVQYMAGFGAR QQVIDTFF
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Derived: Positions 85260 81301 Accession No Contig:ctg25784.2 Ensembl |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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