Repbase Reports |
|---|
| 2003, Volume 3, Issue 9 |
| September 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 175 |
GYPSY17-I_AG |
|||
|---|---|---|---|
GYPSY17-I_AG is an internal portion of retrotransposon GYPSY17_AG - a consensus sequence. |
|||
|
Submitted: 30-Sep-2003 |
Accepted: 30-Sep-2003 |
||
|
Key Words: LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD gag; AP protease; reverse transcriptase; RNase-H; integrase GYPSY17_AG; GYPSY17-LTR_AG; GYPSY17-I_AG |
|||
|
Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Tubmo,J.M.C., Costas,J.C. and Naveira,H.F. |
||
|
Title: GYPSY17_AG, a member of the mdg1 lineage of the Ty3/gypsy group of LTR retrotransposons |
|||
|
Journal: Repbase Reports 3:(9) p. 175 (2003) |
|||
Abstract: GYPSY17_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its ORF2, is phylogenetically grouped with Drosophila representatives of the mdg1 lineage. GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG, GYPSY14_AG, GYPSY15_AG, and GYPSY16_AG are other members of this same lineage in Anopheles gambiae. The GYPSY17-I_AG consensus was reconstructed after multiple alignment of 6 copies. The consensus encodes the 454-aa GYPSY17_AG1p gag-like protein (pos. 1761-3122) and the 1260-aa GYPSY17_AG2p (pos. 2966-6745). The sequence of the LTRs flanking GYPSY17-I_AG is deposited as GYPSY17-LTR_AG. GYPSY17_AG1p: NPNFDHMTKLKEIVRRLELIHKTLQQNKGNIRQCALATYRLQVDEIYSVFRKEIETNYDKYSDSEIKFYN NIIQNLITNIVEKVNNETINTDNNTSDLNETLKSHKKLTLKTTAHVIISILSIYKRQKQIVPTANIDHTA IKTNTSVDSSYKPNMDALEILKTATSLIPTFSGRYDEAEAMLAALETMKEAVDEQHHRLIMRVVQSKLKG KGRKIIGKTVTNIEDALAKIGAYVKKTESPEDIATAIHALKQKTTPKDFGEEIQALAEELEQAYLGEDVA PALATAKTNKIAMAAFGKGLKKEIHQAIVLSGTIPTLDAAIRAIISIDKTNQSTQDKKSDNRQNGQENRY SSNQRQTNTRGIDQRQNNNNWRFPPQQNNNSWRSQPQQNNNNWRSPQTQNGRQGAGFNTRNRQPAGPNFL GQREPQRAILYTQMETQNPQVDQPSTSHYGQHTQ GYPSY17_AG2p: TGSRVQHPKQATRRPKFFRATRTAKGNPLHANGDPEPTGGPALHKPLRATYTINVQKSNFIRTRLGLADS ICNLFVDSGSDISIIKGNKVRPTQIYKPKDIVDIISVGEGTITTHGSTITDVIVEGKKIQQLFHIVPDNF KIPADGILGRDFFMNHRCIINYDTWIFSVKHNGEFLEAPIEDTINGKTLIPPRCEVIRKLDKLKELDTDA VVCAEQLQEDVLVGNCIVNKNYPFIKIINTSNKAKLVNISHIKTIPLNEFEIVKTSNHKDENRLAIIKDL IRKENISEDTDKSFEQLLLSYNDIFHLPNDHLTTNNFYEQDIKLEDKRPVYIPNYKQNHSQGPEIKKQIE KMLQDDVIEHSVSHYNSPILLVPKKSSDEKKWRLVVDFRQLNKKLLPDKFPLPRIDSILDQLGRAKFFST LDLMSGFHQIPLEESSKKYTAFSSTDGHYQFKRLPFGLNISPNSFQRMMTIAMTGLTPECAFVYVDDIVV VGASENHHLKNLEKVFERLRHYNLKLNPEKSCFFKKEVTYLGHKITDKGILPDDSKYDSIKNYPIPQNAD DARRYVAFCNYYRKFIPNFALKAKPLNSLLKKNTKFEWTQECQEAFEYLKNTLISPQILQYPDFSKQFIL TTDASTIACGAVLAQEHDGIDMPICFASRTFTKGEANKAIIEKELAAIHWAIMHFKHYLYGTKFTVKTDH RPLVYLFGMKNPSSKLTRMRLDLEEFDFTVEFVKGKQNVVADALSRIKITSDEIKSINVITRSMNKPVTS DNVLGNTSESDQLKMFHALAYDEVKDLPKLETSVKRNENTIELIGKILNKRKSKELLSVRDIHLNTDIGL QEPLLVKDFQKRKEKSAIVQFIKNIEKKLVMKSITQLAVSETDEIFKEVNPNEFKQIANNHLKNIQILIY TKPQTINDEKTINDILDKVHNTPTGGHIGQYRMYKKIRKEYVWNKMKKSIKDFLDKCITCKLNKHLIKTV EPFVKTDTPNIPFEVVSIDTVGPFQKTNNNNRYAVTLQCNLTKHVTVIAIPNKEANTVARAVIEKFMLIY GTNIKEFRTDMGTEYKNEIFKNISEILRIEHKFSTPYHPQTIGALERNHRCLNEYLRIFTNEHKDDWDDW INYYSFAYNTTPNLDHGYTPFELVFGRNEKISTNITEKSTPLYNYDDYSKEFKYRLKLAHDRTRKHIEQE KMKLLKEQQNINQVNFQIGDQIALTNENRTKLDPVYKGPYKVKEINGPNMIIENTDGVTQNIHKNRAIKI
|
|||
|
Derived: [1] (consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||