Repbase Reports |
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| 2003, Volume 3, Issue 9 |
| September 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 173 |
GYPSY16-I_AG |
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GYPSY16-I_AG is an internal portion of retrotransposon GYPSY16_AG - a consensus sequence. |
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Submitted: 30-Sep-2003 |
Accepted: 30-Sep-2003 |
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Key Words: LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD gag; AP protease; reverse transcriptase; RNase-H; integrase GYPSY16_AG; GYPSY16-LTR_AG; GYPSY16-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Tubmo,J.M.C., Costas,J.C. and Naveira,H.F. |
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Title: GYPSY16_AG, a member of the mdg1 lineage of the Ty3/gypsy group of LTR retrotransposons |
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Journal: Repbase Reports 3:(9) p. 173 (2003) |
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Abstract: GYPSY16_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its ORF2, is phylogenetically grouped with Drosophila representatives of the mdg1 lineage. GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG, GYPSY14_AG, GYPSY15_AG, and GYPSY17_AG are other members of this same lineage in Anopheles gambiae. The GYPSY16-I_AG consensus was reconstructed after multiple alignment of 13 copies. The consensus encodes the 397-aa GYPSY16_AG1p gag-like protein (pos. 967-2157) and the 1231-aa GYPSY16_AG2p (pos. 2133-5825). The sequence of the LTRs flanking GYPSY16-I_AG is deposited as GYPSY16-LTR_AG. GYPSY16_AG1p: LSLLFNGSNLMSKLKDKLFQLRLIQHKLEYLPKNFRVCTVSKYKILARELLTSIQSDLIELGEAISEEYL NKINSETNECFSAIEFRINNYQMTNDSQTEKMAHFDIKIATSLVQTYDGSKENLDIFIDSVNLLKEITPN DQKVMLVKFIKTRITGKARIGLPRDLDNIDEILENIKVRCEEKTNPEIVINQLKTIQARQTTKICEEVEI LTSKLKGLYLEQKIPEEVANKMAVKVGVDTLKEKISNSETKILLKVGHYPTITAATQKVLENEIENNNSN QVLAFNRNQNFSTNNFKRFPNSKTNNYNRYNSNPNFQNRTKRRYYESPNSNRTNPNTYTPNRNRDRHFYR NPRQYNQFGRQNTQPNNFSNQQARRIFTTEAEEEEEQNNFLGQARQE GYPSY16_AG2p: FFRPSPAGIEQLPVMTLNLSANNSTTIKVEKAANKYSSLFIDTGAAVSLFKIGKIRSQHEIDSNNKVRLT GITNNSLITYGTISSNLIFNNATVSHKFHLIPDIIEIEADGILGRDFFTKYKCKIDYEYYLLNFDINGIS ISHPIEDNSLLIPARSEIIHKIDLKNLKKDSVVHAQEITTGIFCANTIVSKNNPCIKFINTTEKDTIINT KFFKPTIEPINNFEIYKVAETKTNMHRVKEILSKINLKNYPDIISQEISKLVNKFSDLFCLNEDPITTNN FYKQTITPKDNIPTYIPNYKQIHSQSKEIDQQVNKMLENNIIENSVSPYNSPILLVPKKTGNDKKWRLVV DFRQLNKKILPDKFPLPRIDTILDQLGNAKYFSTLDLMSGFHQIPLEKESRKYTAFSTPKGHYQFTRLPF GLNISPNSFQRMMAIAMAGLTPEIAFIYIDDIIVIGSSMKNHIENLTQVFNRLRYYNLKLNPEKCKFFKS DVTYLGHKITDQGIYPDETKFETIRKFPIPTNADEVRRFVAFCNYYRKFIQNFAKIAKPLNDLLKKGTLF EWKKEQQTAFDSLKEHLLSPTILKYPDFSKDFIITTDASNFACGAVLSQITNGQDFPIAFASKTFTKGEK NKSIIEKELVAIHWAVKHFKPYVYGRKFTIRTDHRPLVYLFGMKNPTSKLTRIRLDLEEFDFTIQFVAGK SNVAADALSRIVYNSDELKELIPKTKEEDIKSIKNNSIMVVNTRAMVKAQKKVKDTPTAGRNKEEVTNQV FWKTDRPSEVNKILKIKSEVKRNGIEIKVCSHNYNKQLGKRVIPLNNSKGQNGSQEIELALLDICQIAKK FNRDKLAISVEDKLFEYYSQLTIKEIADTAIFGYEIILFDPPKWITSEKEKLKIMEEYHAIPTGGHIGQY RLYLKIREKFKWNNMKQDIISYVQKCEICKVSKVNKHTKEKSIITSTPAKPFTIISIDTVGPLPKTINNN RYAITIQCDLSKYIVIIPIKNKEANTIAKALVEHFILTYGSFLELRSDQGLEYNNEVLSKIAQILKIKQT FSTPYHPQTIGALERNHRSLNEYLRAFTNEHHDDWDDWIKFYEFVYNTTPHTETKYTPFELVFGRTANLP QEIYKHKIDPVYNIEQYYNEMKFKLQKSNEIARRNIIIEKEKREKELNQHINPIDVSIGDLVYLKNENRK KLDPLYLGPFIITNIKDPNCTIKNKHTQKTTTVHKNRLIKN
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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