Repbase Reports |
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| 2003, Volume 3, Issue 8 |
| August 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 157 |
MuDR2_TP |
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MuDR2_TP is an autonomous DNA transposon - an incomplete sequence. |
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Submitted: 31-Aug-2003 |
Accepted: 31-Aug-2003 |
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Key Words: autonomous DNA transposon; MuDR superfamily; transposase; MuDR2_TP |
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Source: consensus |
Organism: Thalassiosira pseudonana |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: MuDR2_TP, a family of MuDR DNA transposons from diatom Thalassiosira pseudonana. |
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Journal: Repbase Reports 3:(8) p. 157 (2003) |
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Abstract: MuDR2_TP is an incomplete copy of the MuDR transposon. It encodes a 987-aa portion of the MuDR2_TPp transposase (pos. 317-3274). Approximately a 200-300 aa long C terminal part of the transposase is missed. There is a 65% identity between MuDR2_TP and MuDR1_TP. MuDR2_TPp: MENALDSRTSKIAMPMHNSQGRTTYGDKLENLNRLRKSVKEWSSPPILLTVAESMTSDQFIEIDVAETIV SRAEGGGYVPRENKRNDNNCYWLAKVCDTNDENYRKSEIIPGIKSACRGSGFKVNCHWVSNRNFIEVKCN RHKHFDEEKSMSHNKNYGGNVNGKGQPKEAKKKSEKPVIGDEDNDEICPVHWRLYWDKKHKRWFLPKLQV GVKVHRGHKHKNLSDIRLETKDLISATDVQLAHDSLNSHIRTAPTHRLLETRTGETLAWHQIYHLKRKQQ MEKQQNQTTACDHLIHYLTTNNDISCVFLFANPKTNLITIKKKKDKRNSALSIEEVGTQLLEDVTDSPSI YAKSMKERYQLIHTETGELLLATAWTTYNQRKKFDMFPEVVSGDDTEGTNSEKRPLYTLLGKDQNGNIFP IAWAFMPSKSLWAYDWFFSQAMPLLHPGNAIKRVEIILTDADPQETSAIENHVGGNLMPSKAQCHLFSKA LHRWCAWHRINRNFTQHPKYKSTLAKMKNSCILSRVEVDVLERWLWYFIKNYESEEEVDLCRQLMDVYLN DDEQDTHIGQIDDDDRKLLLEFITKSFHSNQRKLFRVHFDHSMHIGNQTTSANEGYHSGLKSSDLGPNGN DPMHITAMKIVKMTDSKEGEKSQKAAYDSNSTYGKAKDRKRTVQQFSTVCNSNVSKEYASSVDFFQFRAN EYTFLVKYDYDKVDNDETGGGSKKGEWSVDDTKKLEALRGTFLGKGKGTTPEYKTILHESMKYIIPRFEH TRVVELKKLPDGTWVIVCSCGLFKTMGYACRHMYKVLKRDPTSSDAKIRWHNGYCEDYGRNNELTKAYME LRSVNLPGVSVTDNEVTLIKTSMQIGCGERDEGFFSRSLNKLCLRGRSTFWHENADRFHQVLQGVTHYIV KAAANTAPTQESDTAPMIAGLAATCFGPARMIHSTSVRAVPSQSVSATQNSSSSVPMDDTGVDSSGDSNA RKWSQKT
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Derived: [1] (an incomplete sequence) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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