Repbase Reports |
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| 2003, Volume 3, Issue 8 |
| August 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 156 |
MuDR1_TP |
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MuDR1_TP is an autonomous DNA transposon - a consensus sequence. |
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Submitted: 31-Aug-2003 |
Accepted: 31-Aug-2003 |
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Key Words: autonomous DNA transposon; MuDR superfamily; transposase; MuDR1_TP |
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Source: consensus |
Organism: Thalassiosira pseudonana |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: MuDR1_TP, a family of MuDR DNA transposons from diatom Thalassiosira pseudonana. |
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Journal: Repbase Reports 3:(8) p. 156 (2003) |
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Abstract: MuDR1_TP copies are ~95% identical to the consensus sequence. Surprisingly they are not flanked by target site duplications. MuDR1_TP has 123-bp terminal inverted repeats. This tranpsoson encodes the 1235-aa MuDR1_TPp transposase (pos. 346-1779 and 1956-4226). MuDR1_TPp: MQNNNINAMMQQTGGVAMGGQQQNA00VSVQRQDGGEPGSHGRRNNSSSSSDASFNNGHHGRLITAGQRG NNYSHHTTNGGVVADGAQLQLQRQPQPLTRGGFNRSIYNAMENALATTSTSTSTLTAFSFTRDNRASYAQ TMQRVADIRKDANTWSCPPIKLDVAESLESDYIITIDIMETIDNTTKQIPRPKKRNNINCYWLVEQFFSD NDQNTRDEIISAIKNACRNVGFKVKCQYYNGGYIKDIPAGTGWIDVKCFRCDYHDEEKNKDHYKKKRSNS KSTKEGKEKKKKTRKPVEGMEGNDELCPFFFKVYWDNNRKRWFIPKKQKGEKVHCGHKQQQPSDIRLEAK HLLSSEDEELAKQSFDSFISTSSAKSLLETRSEGKVFGLSWQQLYHLKRKQQREAEDKQTTSCDKLVHYL SSNENISWLGLFADPTTNLLSIRKKKSKGNSALTVEDLSKELVLGDETDNPSLHVKVLKEXVPEFISGDD TEGINCEKRPLYTLLGKDQNEKTFPIAWAFMPSKSFWAYEWFFSMAMPALHPGDAIKRVQLIVTDADNQE TGAVEKLVGGNLKPSKAEDRLYTKAWHRWCAWHRINCNFTQDSKYKPLLTKIKNRCVLSKIEMDMLERWL WYFIKEYESSDEVQFCMALLKAYLNNANQSSHIGEVDEKDRKIILEFITTSFNARSHKLFESEFDDDCMD LGNTTTSASEGYHRGIKNSVLGPKPDDHMHVTAQKLVKMAESKQSDKSQKASFDANATFAKKKDRHETVK EFSNFANDKISDQYKGCQEKFLQYRISEDKFFVKFDYAKYEDDAKDIRLDVDEYNTFHEEESTVKDEELS NDNTKKLKELREKLHSEGNAPTLEYRRMLHESMKYVIPRLEHTRVVELVPLPDGSQVLVCSCRTLKKRGH ACRHMYKLLRRGPTLNDAHVRWQNHYFEDYGCDEELTNAYMDLRSIELPGILLTDADVARIKSSMPVGSG DRDWDYFERSIGKMCLRGNNTFWTANAERLKHVLGNAVWCPPIQKLGILKTNTVQPSTSHTLPSSTPRTL PPSTTYGPTEMVEWTSSYVVPSQRNRCKSYKSNLVDDNQADKTSTCPELNLLEKFHPRYESLCKFAESAD GDDGVKVMEEHFHSCQLRFLNFFHKNNVSNDKLTQPVDNLSKKYAGSNLYHRFKPPYERICKMAEYSGKA GIAVVSEEIAACHVALTALVAGKEKLSNNKKDRRCQKITSPKKRPKR
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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