Repbase Reports |
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| 2003, Volume 3, Issue 7 |
| July 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 137 |
RTE-1_TP |
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RTE-1_TP is a RTE-like non-LTR retrotransposon - a consensus sequence. |
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Submitted: 31-Jul-2003 |
Accepted: 31-Jul-2003 |
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Key Words: non-LTR retrotransposon; RTE clade; endonuclease; reverse transcriptase; RTE-1_TP |
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Source: consensus |
Organism: Thalassiosira pseudonana |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: RTE-1_TP, a family of RTE-like non-LTR retrotransposons from diatom Thalassiosira pseudonana. |
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Journal: Repbase Reports 3:(7) p. 137 (2003) |
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Abstract: RTE-1_TP is a consensus sequence of the RTE-1_TPp family of RTE-like non-LTR retrotransposons. The consensus sequence encodes the 1106-aa RTE-1_TPp protein (pos. 869-4186) composed of the endonuclease and reverse transcriptase domains. The 3' tail is composed of the (CA) microsatellite. RTE-1_TPp: MVQASAVVHTGASSRTDESGTFSIATWNIRSGRAGGLESACRALGAMNVDIGFLQETKLTGGVYTRQSSG YQVIASDASSNRQGGVALCWKEHDSYELEEWRFFGPNVLAFRLVTGGKDFYCVGCYIPPSEEDQSTLDNV RRAQQQCPEKFELLLFGDLNIDLDAPRDTREEIIAEQCDYWKLTCMTTMFKQRRTRRVKGRWTWRQQRLG RWVSTKPDYFLADTAVRRLFKKVVIRRPRHHDSDHRAIIATFWGGQEKRMRNYRRRVASIPLRMPQFGPL PEMETIFEELKEEVGGKSKRDLPHNQWISDRTWALVDYRAMLKTRGSLQQRGERNLSRRIHASFRQDRMA RAENAAMEIEAKLNGGDFKAGWTIAKRWYRAATDRGPKPCFETMETQTTERVELYGKVEPPGEPIPINVQ PFGICDGTPDDDEIRDVVKYHLKSGRAGGASFLRAEDIKRWLRDIEQEEDPERSGGCGRNWRRFVSLIQM IWETGTVPKQMLWVIVVLIPKGGGDYRGIGLLEPFWKVVEIIMDKRLNEVKFHDCLHGFVTKRGCGTAGL EAKLTQQLAYIRQIPLYGIFLDLRKAYDAMDRERCLEILQGYGVGRNMLRLLEYFWNNAELVCRAMGRYG KPFKAYRGVTQGGPVSPKIFNIMVDAIVREWLLQSLGEAEPEMPEYKALSCIFLALFYADDGYIASTDPE LLQESMDVLIALFERVGLRTNVSKTKVETCIDGKIRTRLSDPVYTRMRSGLGTRKEWEARKVECDLCNKQ LAASSLSNHLETQHGVFRSRVINQDLLVEHESRTFTAHRNVSGTYACPVPGCVGTAHTNWTLRRHFHGRH PWDCVSIDGANPLPKCERCGLQCTHRALNTTHTTSQYCREATERKVQQQAAVNSARALNVSFTAYGQSLE RVEVFKYLGRLLAMDDNDMPVVRANLKKARKCWTMFSRLLTGENMSPRVCGMFYRAVIQSVLLFGSESWV LADTAMRVLEGFHVRSAYRMAREHKPRKNNDTGVWRYPSTEEVLEEVGLLTIRQYIEVRRQTIANYIVHR PIFDLCLGEERRRGTSKRLWWWEQRMDLDLAREMGDVISVVAEDEESTGSWTDEEV
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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