Repbase Reports |
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| 2003, Volume 3, Issue 7 |
| July 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 135 |
Harbinger2_TP |
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Harbinger2_TP is an autonomous DNA transposon - a consensus sequence. |
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Submitted: 31-Jul-2003 |
Accepted: 31-Jul-2003 |
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Key Words: DNA transposon; Harbinger superfamily; transposase; DNA-binding protein; Harbinger2_TP |
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Source: consensus |
Organism: Thalassiosira pseudonana |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Harbinger2_TP, a family of autonomous Harbinger-like DNA transposons from diatom Thalassiosira pseudonana. |
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Journal: Repbase Reports 3:(7) p. 135 (2003) |
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Abstract: Harbinger2_TP copies are ~95% identical to the consensus sequence, they are flanked by the TTA 3-bp target site duplications. This transposon has 43-bp terminal inverted repeats (1 mismatch). Harbinger2_TP encodes the 470-aa Harbinger2_TP1p transposase (pos. 298-1707) and the 486-aa Harbinger2_TP2p DNA binding protein (pos. 3224-1767). Harbinger2_TP1p: MSRSGSDPFNYQEYLDDEEELDALHQAKRRKEAIIYASAIATVAAASIPFGVLASAHQGRVPGAVTVKRQ RLAVEDYCQTLSDKHFRRRYRMGKESFWNLLHIVGDHLPSTGENRKNGCVPNGPISHAAHLSMALRIAAG ADPLDVATNHGVNDNQPMVSFWLVIDAIHKSPQLDIQFPTSHEEQEKVAKEFQSKSSIGISCCVGAIDGI LIWIHKPSDSDCDMLGFGQTKFFCGRKKKFGLNMQAVCDAQRRFLWVDIRYPGTTSDFFAFDQSSLKDKL EQPGFLHSGLCLFGDAAYANSPYMCSPFRSATGTQDDFNFFQSQLRITIECAFGMLVHRFGILRKAFPVN VTVSKTNTAVLGLCKLHNFCIQSSNCGDDIVASDFRDASNIIMEGGLVLPRIDRDDGSGNRWRYEEEDRL DNLLDGGQHMDDHSDVDRRRYRYRNELPRQSIHDYIVLNEFRRPDRRATR Harbinger2_TP2p: WPPIADDAPPIAADAPPIAADAPPITAGAADDAASDEDSLSSEVSRHDTEGALTSEALRRAVDGAVDVDE GADDVNAPGEVEKMLTDDNETPPKERTKRTLFLAKTIGIDVDNDLAPFLEKNGKKSITITKKMILQEIKR RDPRIKIKNTKNTTNESLMAVLPDLTDARDVAYIRTQYAMIRDHLLNGVSACTPTAQRKGTDIMRVFLLI NMLPDLRRAYSLSQTGSNREMLDAGKTHMSKFLQLLVRYFNDPSLEVSTPCQPSLHYSFAEPIACNKGEF ELTESKAKKLISDSRRYLTTMINDWEKSGNGSNQRLDDSDDDHDFVFDLWGRFDPETCDGDDRANFLRHL PHYWLMVWHLCDEGDLLRFTCAQLRDDHTASSLSAPPSVSRGSGSARKLAQQTLELHKEIAESVKNIGRA VARCSDDTSYERASKIRRLDKLRADRYLVFRDSKCQASSQEERDAAADYVKDLDEMIDSLKAELMG
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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